View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9677_low_8 (Length: 436)
Name: NF9677_low_8
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 46782369 - 46782787
Alignment:
| Q |
1 |
agcctaaggtctagggaacaaagtcccaatggcatcattcctcaaagcaagccgaagatcatctggaggagtggagtgaagcagtaaggccgcatccgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||||||||||||| | | || |||||||| ||||||| ||||||||| ||||||||||| || ||| |
|
|
| T |
46782369 |
agcctaaggtctagggaacaaagtctcagtagcatcattcctcaaagaaggtcgtagatcatcaggaggagaggagtgaagtagtaaggccgcgtctgaa |
46782468 |
T |
|
| Q |
101 |
cttgcaccaagcttggcaaaataatatgcgcaatgattcccttcgcgaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatatcct |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46782469 |
cttgcaccaagcttggcaaaataatctgcacaatgattcccttcgcgaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatatcct |
46782568 |
T |
|
| Q |
201 |
ggatgagtacaacatgaacatgaaacttagaagtgttaccggttatgaggttgatagaaaggagagaatccgagtagcaaaccagctgttcaatgccgtt |
300 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
46782569 |
ggatgagaacagcatgaacatgaaacttagaagagttaccggttatgaggttgatagaaaggagagaatccgagtagcaaaccaactcttcaatgtcgtt |
46782668 |
T |
|
| Q |
301 |
atccaaagctaaaataagaccgtgcaaaattgcagacagttccgcttctaaaatatctgatgatgagggaagggaacctgaaaatcctagcaggtagaag |
400 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46782669 |
atccaaagctaaagtaagaccgtgcaaaattgcagacagttccgcttctaaaatatctgctgatgaaggaagggaacctgaaaatcctagcaggtagaaa |
46782768 |
T |
|
| Q |
401 |
cctgcgttattgcgaaata |
419 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
46782769 |
cctgcgttgttgcgaaata |
46782787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 53242410 - 53241992
Alignment:
| Q |
1 |
agcctaaggtctagggaacaaagtcccaatggcatcattcctcaaagcaagccgaagatcatctggaggagtggagtgaagcagtaaggccgcatccgaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||| || | |||||||||||||||| | |||| || ||||| || |||| ||||||||| ||||||| ||||| ||| |
|
|
| T |
53242410 |
agcctaatgtctagggaacaaagtctcagtagcatcattcctcaaagaaggccgtaggtcatcagggggagaggagtgaagtcgtaaggctgcatcagaa |
53242311 |
T |
|
| Q |
101 |
cttgcaccaagcttggcaaaataatatgcgcaatgattcccttcgcgaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatatcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53242310 |
cttgcaccaagcttggcaaaataatatgcgcaatgattccattcgtgaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatgtcct |
53242211 |
T |
|
| Q |
201 |
ggatgagtacaacatgaacatgaaacttagaagtgttaccggttatgaggttgatagaaaggagagaatccgagtagcaaaccagctgttcaatgccgtt |
300 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
53242210 |
ggatgagaacagcatgaacatggaacttaggagagttaccagttatgaggttgatagaaaggagagaattcgagtagcaaaccaactcttcaatgccgtt |
53242111 |
T |
|
| Q |
301 |
atccaaagctaaaataagaccgtgcaaaattgcagacagttccgcttctaaaatatctgatgatgagggaagggaacctgaaaatcctagcaggtagaag |
400 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53242110 |
atccaaagctaaagtaagaccgtgaaaaattgcagacagtttcgcttctaaaatatctgctgatgaaggaagggaacctgaaaatcctagcaggtagaaa |
53242011 |
T |
|
| Q |
401 |
cctgcgttattgcgaaata |
419 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
53242010 |
cctgcgttgttgcgaaata |
53241992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 3422594 - 3422501
Alignment:
| Q |
191 |
ttaatatcctggatgagtacaacatgaacatgaaacttagaagtgttaccggttatgaggttgatagaaaggagagaatccgagtagcaaacca |
284 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||| | |||| |||||| || || |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3422594 |
ttaatatcctggatgagaaccgcatggacatgaaacctcgaaggtttaccgacaataagattgatagagaggagggaatccgagtagcaaacca |
3422501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 26017618 - 26017688
Alignment:
| Q |
11 |
ctagggaacaaagtcccaatggcatcattcctcaaagcaagccgaagatcatctggaggagtggagtgaag |
81 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| | | || || ||||| ||||||| ||||||||| |
|
|
| T |
26017618 |
ctagggaacaaagtcccaataacatcattcttcaaagaaggtcgtaggtcatcaggaggagaggagtgaag |
26017688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 26590574 - 26590437
Alignment:
| Q |
123 |
aatatgcgcaatgattcccttcgcgaagcgtgtgatggagagaacaattcaactgtgacaatttatctttaatatcctggatgagtacaacatgaacatg |
222 |
Q |
| |
|
||||||| |||| |||||||||||| | ||||||||||| |||||||||| || || | || |||||||| || || ||||| ||| | || || || |
|
|
| T |
26590574 |
aatatgcacaataattcccttcgcggatagtgtgatggagcgaacaattcatttgagaaagcttgtctttaatgtcttgtatgagaacagcgtggacgtg |
26590475 |
T |
|
| Q |
223 |
aaacttagaagtgttaccggttatgaggttgatagaaa |
260 |
Q |
| |
|
| |||| |||| |||||||| |||||||||| ||||| |
|
|
| T |
26590474 |
atacttcgaagagttaccggcaatgaggttgagagaaa |
26590437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University