View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9678_low_3 (Length: 293)
Name: NF9678_low_3
Description: NF9678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9678_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 39952417 - 39952691
Alignment:
| Q |
1 |
gcacacactccaaggatcatgagggtcatgtcttgaagagcttcataaacataaatccagaagcttcgaagttcagtttcggcaaatttgttgatgccaa |
100 |
Q |
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| T |
39952417 |
gcacacactccaaggatcatgagggtcatgtcttgaagagcttcataaacataaatccagaagcttcgaagttcagtttcggcaaatttgttgatgccaa |
39952516 |
T |
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| Q |
101 |
aaagctcttgtctcctatgtcgcgattcagaatcgccacctagtcccgtggtggttgatgttgaaatcttttctgcaatgccatcaactccaccatgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952517 |
aaagctcttgtctcctatgtcgcgattcagaatcgccacctagtcccgtggtggttgatgttgaaatcttttctgcaatgccatcaactccaccatgaaa |
39952616 |
T |
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| Q |
201 |
cttgagtttctttacatcgtggccttccacaatagaccccaattcttcagcacagatttggaaacctgcagcttt |
275 |
Q |
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| T |
39952617 |
cttgagtttctttacatcgtggccttccacaatagaccccaattcttcagcacagatttggaaacctgcagcttt |
39952691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5418355 - 5418290
Alignment:
| Q |
1 |
gcacacactccaaggatcatgagggtcatgtcttgaagagcttcataaacataaatccagaagctt |
66 |
Q |
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| T |
5418355 |
gcacacactccaagtatcatgagagtcatgtcttgaagtgcttcccaaacaaaaacccagaagctt |
5418290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 5418200 - 5418081
Alignment:
| Q |
156 |
tgatgttgaaatcttttctgcaatgccatcaactccaccatgaaacttgagtttctttacatcgtggccttccacaatagaccccaattcttcagcacag |
255 |
Q |
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| T |
5418200 |
tgatgtagaaagtttttctgcaatgccatcaatcttaccatgatatttcaacttcttcacatcatggccttcaacaatagaccctaattcatcaccacag |
5418101 |
T |
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| Q |
256 |
atttggaaacctgcagcttt |
275 |
Q |
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||||| || |||||| |||| |
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| T |
5418100 |
atttgaaatcctgcatcttt |
5418081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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