View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9678_low_5 (Length: 210)
Name: NF9678_low_5
Description: NF9678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9678_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 31220127 - 31220298
Alignment:
| Q |
15 |
ttggtggttggggtgggggactggagtgataatgaggtcgatatatagttcaatcctcacttccagcataaataactaacagtactaacatttgtccgtc |
114 |
Q |
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| T |
31220127 |
ttggtggttggggtgggggactggagtgataatgaggtcgata----gttcaatcctcacttccagcataaataactaacagtactaccatttgtccgtc |
31220222 |
T |
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| Q |
115 |
tagcnnnnnnntagcagtataccaacaacatgtgctattaagaaacgaagacaatagattgagatgcaatactaca |
190 |
Q |
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|| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31220223 |
taacaaaaaaatagcagtataccaacaacacgtgctattaagaaacgaagacaatagattgagatgcaatactaca |
31220298 |
T |
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