View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9679_high_12 (Length: 296)
Name: NF9679_high_12
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 7772268 - 7772544
Alignment:
| Q |
1 |
tcgagtttggtgttggttttgattatgatatgttaattggtttgccgtattcaccttttcaatgttgctgcagctttcaaaagaagggaagtcaaacata |
100 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7772268 |
tcgactttggttttggttttgattatgatatgttaattggtttgccgtattcaccttttcaatgttgctgcagctttcaaaagaagggaagtcaaacata |
7772367 |
T |
|
| Q |
101 |
tgatcaggtaaaacctcagattctaattttgaattatcagttttggccaaaggctgcaacttttccggttggtcacttttcaataatgaatgcctgttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7772368 |
tgatcaggtaaaacctcagattctaattttgaattatcagttttggccaaaggctgcaacttttccggttggtcacttttcaataatgaatgcctgttta |
7772467 |
T |
|
| Q |
201 |
aggtattattaggtggctttctggagtttcgaccttccaaacactaacccgattttgcttatcaccacacccgggct |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7772468 |
aggtattattaggtggctttctggagtttcgaccttccaaacactaacccgattttgcttatcaccacacccgggct |
7772544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 7775171 - 7775372
Alignment:
| Q |
13 |
ttggttttgattatgatatgttaattggtttgccgtattcaccttttcaatgttgctgcagctttcaaaagaagggaagtcaaacatatgatcaggtaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7775171 |
ttggttttgattatgatatgttaattggtttgctgtattcaccttttcaatgttgctgcagctttcaaaagaagggaagtcaaatatatgatcaggtaac |
7775270 |
T |
|
| Q |
113 |
acctcagattctaattttgaattatcagttttggccaaaggctgcaacttttccggttggtcacttttcaataatgaatgcctgtttaaggtattattag |
212 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
7775271 |
acctcggattctaattttgaattatcggttttggccaaaggctgcaacttttccggttggtcatttttcaacaatgaatgcatgttaaaggtattattag |
7775370 |
T |
|
| Q |
213 |
gt |
214 |
Q |
| |
|
|| |
|
|
| T |
7775371 |
gt |
7775372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 7775771 - 7775833
Alignment:
| Q |
215 |
ggctttctggagtttcgaccttccaaacactaacccgattttgcttatcaccacacccgggct |
277 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
7775771 |
ggctttctggagtctcgatctcccaaacactaaccctattttgcttatcaccacaccctggct |
7775833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University