View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9679_high_5 (Length: 387)

Name: NF9679_high_5
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9679_high_5
NF9679_high_5
[»] chr4 (6 HSPs)
chr4 (36-361)||(45893069-45893396)
chr4 (86-361)||(48665310-48665590)
chr4 (86-360)||(21800811-21801090)
chr4 (89-207)||(49421225-49421339)
chr4 (318-361)||(12583630-12583673)
chr4 (274-339)||(49421114-49421179)
[»] chr2 (3 HSPs)
chr2 (85-354)||(36657890-36658158)
chr2 (86-147)||(29463346-29463407)
chr2 (275-337)||(20361535-20361597)
[»] chr7 (11 HSPs)
chr7 (89-361)||(23772906-23773181)
chr7 (86-301)||(26469658-26469869)
chr7 (86-301)||(26546130-26546341)
chr7 (85-175)||(12119386-12119473)
chr7 (274-347)||(12119549-12119621)
chr7 (248-347)||(22859649-22859747)
chr7 (296-361)||(26469940-26470005)
chr7 (296-361)||(26546380-26546445)
chr7 (250-351)||(11275814-11275915)
chr7 (253-334)||(48433880-48433961)
chr7 (253-337)||(2198207-2198291)
[»] chr3 (1 HSPs)
chr3 (85-345)||(6000317-6000574)
[»] scaffold0219 (1 HSPs)
scaffold0219 (139-356)||(6324-6533)
[»] chr6 (1 HSPs)
chr6 (85-349)||(23660777-23661046)
[»] scaffold0527 (3 HSPs)
scaffold0527 (228-361)||(3705-3838)
scaffold0527 (295-361)||(11768-11834)
scaffold0527 (152-217)||(3824-3889)
[»] chr1 (3 HSPs)
chr1 (255-361)||(16180881-16180990)
chr1 (239-340)||(9004805-9004907)
chr1 (102-140)||(9004696-9004734)
[»] chr5 (1 HSPs)
chr5 (89-145)||(32538642-32538698)
[»] chr8 (2 HSPs)
chr8 (115-210)||(923310-923403)
chr8 (248-339)||(923420-923512)
[»] scaffold0445 (1 HSPs)
scaffold0445 (85-133)||(7112-7160)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 36 - 361
Target Start/End: Complemental strand, 45893396 - 45893069
Alignment:
Q  36 aaactaataatttagagccgatggataacttaactggtttgatagatcaaactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttca 135  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45893396 aaactaataatttagagccgttggataacttaactggtttgatagatcaaactagtgtgttaacccgtgcaatgcgcgggtgatagactattatttttca 45893297  T
Q  136 atctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtattttttgttaaaaata--atgtta 233  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  45893296 atctcaaattgtgtttattttatttatttattgatgaaaagcatctacgcaccgtgaatttttaaatatgtcagtattttttgttaaaaataatatgtta 45893197  T
Q  234 gtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatat 333  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45893196 gtatttttttgcctcaatgatgacaaatatgtgtcacatgttttcatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatat 45893097  T
Q  334 atttataggtttcagatcgtcgttgatg 361  Q
    ||||||||||||||||||||||||||||    
T  45893096 atttataggtttcagatcgtcgttgatg 45893069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 86 - 361
Target Start/End: Original strand, 48665310 - 48665590
Alignment:
Q  86 actagtgtgttaacctgtgcaat----gctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatct 181  Q
    ||||||||||||||| |||||||    ||  ||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||     
T  48665310 actagtgtgttaacccgtgcaattaatgcatgggtgataggctattatttttcaatctcaaattgtatt-attttatttattttttgatgaaaaacatcc 48665408  T
Q  182 acgcaccgtgaatttttaaatatgtcagtatttttt-gttaaaaataa--tgttagtattttttagcctcaatgatgacaaatatgtgtcacatgttttt 278  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  48665409 acgcaccgtgaatttttaaatatgtcagtatttttttgttaaaaataacatgttagtatttttt-gccgcaatgatgacaaatatgtgtcacatgttttt 48665507  T
Q  279 atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 361  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  48665508 atgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaatatttatgggttttagatcgtcgtcgatg 48665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 86 - 360
Target Start/End: Original strand, 21800811 - 21801090
Alignment:
Q  86 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 185  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||| ||       
T  21800811 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttatttt-tttatttattgaagaaaattattta--t 21800906  T
Q  186 accgtgaatttttaaatatgtcagtattttttgttaaaaata--atgttagtattttt---tagcctcaatgatgacaaatatgtgtcacatg-----tt 275  Q
     | ||||||||||||||||||||||||||||||| |||||||  || |||| ||||||   | ||| ||||||||| ||||||||||||||||     ||    
T  21800907 cctgtgaatttttaaatatgtcagtattttttgtcaaaaataatattttagaatttttttattgccacaatgatgataaatatgtgtcacatgtttcttt 21801006  T
Q  276 tttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgat 360  Q
    ||||||||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  21801007 tttatgtttattagtggtaaatatatgttacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgat 21801090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 49421339 - 49421225
Alignment:
Q  89 agtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcacc 188  Q
    |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||| ||    ||    
T  49421339 agtgtgttaacccgcgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttatttt-tttatttatcgatgaaaattattta--tccc 49421244  T
Q  189 gtgaatttttaaatatgtc 207  Q
    |||||||||||||||||||    
T  49421243 gtgaatttttaaatatgtc 49421225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 12583673 - 12583630
Alignment:
Q  318 tataaatgaaaaatatatttataggtttcagatcgtcgttgatg 361  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatg 12583630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 49421179 - 49421114
Alignment:
Q  274 tttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttat 339  Q
    ||||||||||||| | || |||| ||||||| ||| |||||||| ||||| |||||||||||||||    
T  49421179 tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttat 49421114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 85 - 354
Target Start/End: Original strand, 36657890 - 36658158
Alignment:
Q  85 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacg 184  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  36657890 aactagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttattttatttatttattaatgaaaagtatctacg 36657988  T
Q  185 caccgtgaatttttaaatatgtcagtattttttgttaaaaataatgttagtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgttt 284  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  36657989 caccatgaatttttaaatatgtcagtatttttggttaaaaataatgttagtatttttttgccacaatgatgacaaatatgtgtcacatgtttttatgttt 36658088  T
Q  285 atcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtc 354  Q
    |||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  36658089 atcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtatatttatgggtttcagatcgtc 36658158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 29463346 - 29463407
Alignment:
Q  86 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgt 147  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||    
T  29463346 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttatcaatcttaaattgt 29463407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 20361597 - 20361535
Alignment:
Q  275 ttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 337  Q
    |||||||||||| | |  ||||||||||||  |||||||||||||||| ||||||||||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaaatatattt 20361535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 89 - 361
Target Start/End: Original strand, 23772906 - 23773181
Alignment:
Q  89 agtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcacc 188  Q
    |||||||||| | ||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |    
T  23772906 agtgtgttaatccgtgcaatgcacgtgtgatagactattatttttcaatctcaaattat-tttattttatttatttattgatgaaaagtatctacgcagc 23773004  T
Q  189 gtgaatttttaaatatgtcagtattt-tttgttaaaaataat--gttagtatttttta-gcctcaatgatgacaaatatgtgtcacatgtttttatgttt 284  Q
    |||||| |||||||||||||||||   |||||||||||||||  |||| ||||||||  ||| |||||||||||||||||||||||| ||||||||||||    
T  23773005 gtgaatatttaaatatgtcagtatagatttgttaaaaataatatgttaatattttttttgccgcaatgatgacaaatatgtgtcacaggtttttatgttt 23773104  T
Q  285 atcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 361  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  23773105 atcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgagtttcagatcgtcgtcgatg 23773181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 86 - 301
Target Start/End: Original strand, 26469658 - 26469869
Alignment:
Q  86 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 185  Q
    |||||||||||||||  ||| |||| ||||||||||||||||||||||||||||| | ||       |||| ||| ||||||||||||||  ||||||||    
T  26469658 actagtgtgttaacccttgcgatgcacgggtgatagactattatttttcaatctctattt-------ttttcttt-tttattgatgaaaagcatctacgc 26469749  T
Q  186 accgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttatg 281  Q
    ||| |||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  26469750 accatgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttatg 26469849  T
Q  282 tttatcaatggtaaatatat 301  Q
    ||||||| ||||||||||||    
T  26469850 tttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 86 - 301
Target Start/End: Original strand, 26546130 - 26546341
Alignment:
Q  86 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 185  Q
    |||||||||||||||  ||| |||| ||||||||||||||||||||||||||||| | ||       |||| ||| ||||||||||||||  ||||||||    
T  26546130 actagtgtgttaacccttgcgatgcacgggtgatagactattatttttcaatctctattt-------ttttcttt-tttattgatgaaaagcatctacgc 26546221  T
Q  186 accgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttatg 281  Q
    ||| |||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  26546222 accatgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttatg 26546321  T
Q  282 tttatcaatggtaaatatat 301  Q
    ||||||| ||||||||||||    
T  26546322 tttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 12119386 - 12119473
Alignment:
Q  85 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaa 175  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||  |||||| ||||||||||||||||||||||    
T  12119386 aactagtgtgttaacctgtacaatgcacgggtgataaactattattttt-aatctcaaat--tgtttaatttatttatttattgatgaaaa 12119473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 12119549 - 12119621
Alignment:
Q  274 tttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttca 347  Q
    ||||||||||||| | || |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  12119549 tttttatgtttattattgataaatatatgtcccatgtttt-atgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 22859649 - 22859747
Alignment:
Q  248 caatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtg-tttttatgtataaatgaaaaatatatttataggtttc 346  Q
    ||||||| | ||||||||||||||| |||||||||||||  ||| | ||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||    
T  22859649 caatgataataaatatgtgtcacat-tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatg-aaaatatatttatgggtttc 22859746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 26469940 - 26470005
Alignment:
Q  296 atatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 361  Q
    |||||| |||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatg 26470005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 26546380 - 26546445
Alignment:
Q  296 atatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 361  Q
    |||||| |||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatg 26546445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 11275814 - 11275915
Alignment:
Q  250 atgatgacaaatatgtgtcacatgt-ttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcag 348  Q
    ||||||||||||||||||| ||| | ||||| |||||| | || ||||||||||||  || |||||||| ||||| ||||||||||||||  | ||||||    
T  11275814 atgatgacaaatatgtgtctcatatcttttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatttcag 11275912  T
Q  349 atc 351  Q
    |||    
T  11275913 atc 11275915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 48433880 - 48433961
Alignment:
Q  253 atgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatata 334  Q
    ||||||||||||| ||  || ||||||||||||| | || ||||  ||||||||||||||||||| || | |||||||||||    
T  48433880 atgacaaatatgtatcctatatttttatgtttattagtgataaacttatgtcccgtgtttttatgcatcagtgaaaaatata 48433961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 2198291 - 2198207
Alignment:
Q  253 atgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 337  Q
    ||||||||||||| ||  || ||||||||||||| | || || ||||||||| | |||||||||| ||   ||||||||||||||    
T  2198291 atgacaaatatgtatcctatatttttatgtttattagtgctagatatatgtctcatgtttttatgcatctgtgaaaaatatattt 2198207  T

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Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 85 - 345
Target Start/End: Complemental strand, 6000574 - 6000317
Alignment:
Q  85 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacg 184  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||       |||||||| ||||||||||||||  ||||| |    
T  6000574 aactagtgtgttaacctgtgcaatgcacgagtgataaactattatttttcaatctcaattt-------ttttatttttttattgatgaaaagcatctatg 6000482  T
Q  185 caccgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttat 280  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  6000481 caccgtgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttat 6000382  T
Q  281 gtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggttt 345  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  6000381 gtttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatatttatgggttt 6000317  T

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Target: scaffold0219 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 139 - 356
Target Start/End: Complemental strand, 6533 - 6324
Alignment:
Q  139 tcaaattgtgtttattttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtattttttgttaaaaataat--gttagta 236  Q
    ||||||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||         ||||||||||||||  |||||||    
T  6533 tcaaattgt-tttattttatttatttattgatgaaaagcacctacgcaccgtgaatttttaaatatgt---------ttgttaaaaataatatgttagta 6444  T
Q  237 ttttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatt 336  Q
    |||||| ||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6443 tttttttgctacaatgatgacaaatatgtgtcacatgtttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatt 6344  T
Q  337 tataggtttcagatcgtcgt 356  Q
    ||  ||||||||||||||||    
T  6343 tacgggtttcagatcgtcgt 6324  T

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Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 85 - 349
Target Start/End: Original strand, 23660777 - 23661046
Alignment:
Q  85 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttatt-ttattt-atttattgatgaaaaatatcta 182  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||  |||  |||||    
T  23660777 aactagtgcgttaaccggtgcaatgcacgggtgatagactattatttttctatctcaaattgt-tttattattattttatttattgattgaaagcatcta 23660875  T
Q  183 cgcaccgtgaatttttaaatatgtcagtattttttgttaaaaataat--gttagtattttttag--cctcaatgatgacaaatatgtgtcacatgttttt 278  Q
    | || ||||||||||||| ||||| ||||||||||||||||||||||  |||||| ||||||    || ||||||||| |||||||||||||||||||||    
T  23660876 cacatcgtgaatttttaactatgtaagtattttttgttaaaaataatatgttagttttttttcttcccgcaatgatgagaaatatgtgtcacatgttttt 23660975  T
Q  279 atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcaga 349  Q
    |||||||||| || ||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23660976 atgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatgggtttcaga 23661046  T

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Target: scaffold0527 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 228 - 361
Target Start/End: Complemental strand, 3838 - 3705
Alignment:
Q  228 atgttagtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaa 327  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3838 atgtcagtatttttttgccgcaatgatgacaaatatgtgtcacatgtttttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaa 3739  T
Q  328 aaatatatttataggtttcagatcgtcgttgatg 361  Q
    |||||||||||| ||||| |||||||||| ||||    
T  3738 aaatatatttatgggttttagatcgtcgtcgatg 3705  T

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Target: scaffold0527; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 11834 - 11768
Alignment:
Q  295 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatg 11768  T

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Target: scaffold0527; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 3889 - 3824
Alignment:
Q  152 attttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtatttttt 217  Q
    ||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3889 attttttttatttatcgatgaaaagcatctacgcaccgtgaatttttaaatatgtcagtatttttt 3824  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 361
Target Start/End: Complemental strand, 16180990 - 16180881
Alignment:
Q  255 gacaaatatgtgtcacatgttttt---atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatc 351  Q
    ||||||||||||||||||||||||   |||||||| | || ||||||||||||||||||||||||||||||||||||||| | |  || |||||||||||    
T  16180990 gacaaatatgtgtcacatgttttttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcagatc 16180891  T
Q  352 gtcgttgatg 361  Q
    ||||| ||||    
T  16180890 gtcgtcgatg 16180881  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 9004805 - 9004907
Alignment:
Q  239 ttttagcctcaatgatgacaaatatgtgtcacatgttttt-atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 337  Q
    |||| ||| ||||||||||||||| | ||| ||| ||||| |||| ||| | || |||||||||||| | |||||||||| |||||||| ||||||||||    
T  9004805 tttttgccgcaatgatgacaaatacgcgtcccatattttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatatattt 9004904  T
Q  338 ata 340  Q
    |||    
T  9004905 ata 9004907  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 9004696 - 9004734
Alignment:
Q  102 gtgcaatgctcgggtgatagactattatttttcaatctc 140  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  9004696 gtgcaatgcacgggtgatagactattattttttaatctc 9004734  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 32538698 - 32538642
Alignment:
Q  89 agtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaatt 145  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  32538698 agtgtgttaacttgtgcaatgcacgggtgatagactattatttttcaatctcaaatt 32538642  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 923310 - 923403
Alignment:
Q  115 gtgatagactattatttttcaatctcaaattgtgtttattt-tatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagt 210  Q
    ||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||| |||||||| ||     |||||||||||||||||||||||    
T  923310 gtgatagactattatttttcaatttcaaattgt-tttatttatttttatttattgatcaaaaatattta--tttcgtgaatttttaaatatgtcagt 923403  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 339
Target Start/End: Original strand, 923420 - 923512
Alignment:
Q  248 caatgatgacaaatatgtgtcacatgtttt---tatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttat 339  Q
    |||||||||||||||||| |||||||||||   ||||||||| | || ||||||||||||| ||| |||||||| |||||| |||||||||||||    
T  923420 caatgatgacaaatatgt-tcacatgttttttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatg-aaaatatatttat 923512  T

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Target: scaffold0445 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 7160 - 7112
Alignment:
Q  85 aactagtgtgttaacctgtgcaatgctcgggtgatagactattattttt 133  Q
    |||||||||||||||  ||||||||| |||||||||||||||| |||||    
T  7160 aactagtgtgttaactcgtgcaatgcacgggtgatagactatttttttt 7112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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