View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9679_low_1 (Length: 731)
Name: NF9679_low_1
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 154 - 713
Target Start/End: Complemental strand, 49929699 - 49929140
Alignment:
| Q |
154 |
acacatcatggtcgacaaaagtacttatttttcacatagattgcaacaatgatcacggtaacatcacaagtgctaaaataaaagtccatacctttaattt |
253 |
Q |
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| T |
49929699 |
acacatcatggtcgacaaaattacttatttttcacatagattgcaaaaatgatcacggtaacatcacaagtgctaaaataaaagtccatacctttaattt |
49929600 |
T |
|
| Q |
254 |
ttgtatagtattctataacatcatcgactaaatcatcaaaacttggtatgtaaccatgtaatccttcagataaaccaaaacccggaaaatccattgcata |
353 |
Q |
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| T |
49929599 |
ttgtatagtattctataacatcatcgactaaatcatcaaaacttggtatgtaaccatgtaatccttcagataaaccaaaacccggaaaatccattgcata |
49929500 |
T |
|
| Q |
354 |
aacaccaaacccagaagcagcaattctccttgcaatacctgaacaatcattcaaattaaacctccatcctcaaatttgataactctctagctctgttgca |
453 |
Q |
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| T |
49929499 |
aacaccaaacccagaagcagcaattctccttgcaatacctgaacaatcattcaaattaatcctccatcctcaaatttgataactctctagctctgttaca |
49929400 |
T |
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| Q |
454 |
aagacaaaccttcaaagaagaaagtgcaagtactgccatatccatgacagaaaaacaaagcccctttaattggaacgccatgttctggcatccagctttt |
553 |
Q |
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| T |
49929399 |
aagacaaaccttcaaagaagaaagtgcaagtactgccatatccatgacagaaaaacaaagcccctttaattggaacgccatgttctggcatccagctttt |
49929300 |
T |
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| Q |
554 |
gcagaaaatctccaatccccttgaattcttttcataccactgataaccaaaattaatgtatagacatcattattcacataacacatttcacaatttaggg |
653 |
Q |
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| T |
49929299 |
gcagaaaatctccaatccccttgaattcctttcataccactgataaataaaattaatgtatagacatcattattcacataacacatttcacaatttaggg |
49929200 |
T |
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| Q |
654 |
tatgtttggattaatttacttatgtttatcttgtgacataagcacttgtgaaaacatctt |
713 |
Q |
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| T |
49929199 |
tatgtttggattaatttacttatgtttatctagagacataagcacttgtgaaaacatctt |
49929140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 49929849 - 49929792
Alignment:
| Q |
4 |
gtcctaatatcagaactcaaattgtggtcgcagacctttacttaaaaatcaatgatgg |
61 |
Q |
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| T |
49929849 |
gtcctaatatcagaactcaaattgtggtcgcagacctttacttaaaaatcaatgatgg |
49929792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 240 - 396
Target Start/End: Complemental strand, 23288124 - 23287968
Alignment:
| Q |
240 |
catacctttaatttttgtatagtattctataacatcatcgactaaatcatcaaaacttggtatgtaaccatgtaatccttcagataaaccaaaacccgga |
339 |
Q |
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| T |
23288124 |
cataccttttatttgtgtataatgctctataacatcgtcgacaagatcatcgaagtttggtatgtaaccatgcaatccttctgaaagtccaaaacctgga |
23288025 |
T |
|
| Q |
340 |
aaatccattgcataaacaccaaacccagaagcagcaattctccttgcaatacctgaa |
396 |
Q |
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| T |
23288024 |
tagtccatcgcaaaaacagcatacccagatgcagcaattctcctcgcaacacctgaa |
23287968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 457 - 594
Target Start/End: Complemental strand, 23287830 - 23287693
Alignment:
| Q |
457 |
acaaaccttcaaagaagaaagtgcaagtactgccatatccatgacagaaaaacaaagcccctttaattggaacgccatgttctggcatccagcttttgca |
556 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||| ||| ||| || | || ||||||| || |||||||||||||| ||||| |
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| T |
23287830 |
acaaaccttcaaagaagaatgtgcaagtatcaccatatccatgacaaaaacacacagatgccttgattggaattcctgactctggcatccagctcttgca |
23287731 |
T |
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| Q |
557 |
gaaaatctccaatccccttgaattcttttcataccact |
594 |
Q |
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|||||| ||||||||||| |||||| |||||||||||| |
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| T |
23287730 |
gaaaatttccaatcccctcgaattcctttcataccact |
23287693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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