View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9679_low_15 (Length: 380)
Name: NF9679_low_15
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 35044010 - 35043647
Alignment:
| Q |
1 |
ggaggtggccgatcaaaggccaagctccactggcttctggtggtggtgtctttgaagctacactagtattaatgcggcggcttctcagtagccaaaagag |
100 |
Q |
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| T |
35044010 |
ggaggtggccgatcaaaggccaagctccaccggcttctgg---------------agctacactagtattaatgcggcggcttctcagtagccaaaagag |
35043926 |
T |
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| Q |
101 |
aacgaaaagaaacaacaaagtggtgcaaatagtaaatggttgaagggtcgaaggtgaaagcaaattattcatcatttgcttggtgttagaaatggagtac |
200 |
Q |
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| T |
35043925 |
aacgaaaagaaacaacaaagtggtgcaaatagtaaatggttgaagggtcgagggtgaaagcaaattattcatcatttgcttggtgttagaaatggagtac |
35043826 |
T |
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| Q |
201 |
tatagctagcggtgtagtgtaatgtgtgatgttggtttctctgcaggtgtagatttgaacgtatataaaagggatggaggagcactatctgccggcagag |
300 |
Q |
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| T |
35043825 |
tatagctagcggtgtagtgtaatgtgtgatgttggtttctctgcaggtgtagatttgaacgtatataaaagggatggaggagcactatctgccagcagag |
35043726 |
T |
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| Q |
301 |
aaaacacatatgcaggggccagcccaataattttgaaaaataattgaagcatgcataaaagatgatagaattatctacc |
379 |
Q |
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| T |
35043725 |
aaaacacatatgcaggggccagcccaataattttgaaaaataattgaagcatgcacaaaagatgatagaattatatacc |
35043647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35035849 - 35035791
Alignment:
| Q |
1 |
ggaggtggccgatcaaaggccaagctccactggcttctggtggtggtgtctttgaagct |
59 |
Q |
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| T |
35035849 |
ggaggtggccgattaaaggccaagcgccagcagcttcgggtggtggtgtcattgaagct |
35035791 |
T |
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