View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9679_low_17 (Length: 338)
Name: NF9679_low_17
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 5173536 - 5173204
Alignment:
| Q |
1 |
tttaataagaggtcctaatgtattagcatccaataattgcannnnnnnctatttatatttgtaaacccattatcaggtttttaactatttatataaaaga |
100 |
Q |
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| T |
5173536 |
tttaataagaggtcctaatgtattagcatccaataattgcatttttttctatttatatttgtaaacccattatcaagttttttactatttatataaaaga |
5173437 |
T |
|
| Q |
101 |
acaatttactctttaacgtgtgcttgatgtacataacattcaaaacatgaataacaaatcaaatgcgtagcatctagaaacaaccatcaaaatcattatt |
200 |
Q |
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| T |
5173436 |
acaatttactctttcacgtgtgcttgatgtacataacattcaaaacatgaaaaacaaagcaaatgcgtagcatctagaaacaaccatcaaaatcattatt |
5173337 |
T |
|
| Q |
201 |
caaagcaatgcatcttctggtgaaggaaacacatcatttgggttactattcaaatatctttgtctagctgaatcatctggatcactgtaact-------- |
292 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173336 |
caaagcaatgcatcttccggtgaaggaaacacatcatttgggttgctattcaaatatctttgtctagctgaatcatctggatcactgtaacttaatccag |
5173237 |
T |
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| Q |
293 |
---cggatccatctgtactaaggactaataatg |
322 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5173236 |
tgacggatccatctgtactaaggactaataatg |
5173204 |
T |
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