View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9679_low_21 (Length: 308)
Name: NF9679_low_21
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_21 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 52446098 - 52445799
Alignment:
| Q |
1 |
attgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacatta |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52446098 |
attgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaacacaactatacatta |
52445999 |
T |
|
| Q |
101 |
tgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcatacgtgtcacggt |
200 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52445998 |
tgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacatgaag--------agtaaatcaaacatcaacatcatcatacgtgtcagggt |
52445907 |
T |
|
| Q |
201 |
tcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52445906 |
tcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttttagacaaatgtgttagtactcaatagtttgtaaga |
52445807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 52447031 - 52446729
Alignment:
| Q |
7 |
attgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattg |
106 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||| ||| ||||||||||||||||||||| || |||||||||||||||||| |||||||| ||||| |
|
|
| T |
52447031 |
attgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattg |
52446933 |
T |
|
| Q |
107 |
tgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcat----------acgtgtca |
196 |
Q |
| |
|
|| | ||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||| |||||| | |||| ||| |
|
|
| T |
52446932 |
tggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaaatcaaacatcaatatcatcgtacataagtgaacgtatca |
52446841 |
T |
|
| Q |
197 |
cggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgt |
296 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||||||| || |||| ||||| |
|
|
| T |
52446840 |
aggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacctaaaacttgtagacagatatgttagtgcttaataatttgt |
52446741 |
T |
|
| Q |
297 |
aagaagaaatta |
308 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
52446740 |
atgaataaatta |
52446729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 52447786 - 52447710
Alignment:
| Q |
232 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaatta |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| |||||||||| |
|
|
| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaatta |
52447710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University