View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9679_low_23 (Length: 307)

Name: NF9679_low_23
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9679_low_23
NF9679_low_23
[»] chr3 (1 HSPs)
chr3 (1-297)||(52444979-52445275)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 52444979 - 52445275
Alignment:
Q  1 aaggcatagagctgcgtgaaagtagtatggagcctcccatctaagctggcaaagaggcctctcaccgcatcttcagtgagtgcttgctgctgcagattca 100  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52444979 aaggcatagagctgcgcgaaagtagcatggagcctcccatctaagctggcaaagaggcctctcaccgcatcttcagtgagtgcttgctgctgcagattca 52445078  T
Q  101 aaacttggttctgcagctccgcaatcttcgcaacatgagcaagaaccttagcaatcctaacacaaagataaggtgttgcactgccacgcctgtgcatgac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52445079 aaacttggttctgcagctccgcaatcttcgcaacatgagcacggaccttagcaatcctaacacaaagataaggtgttgcactgccacgcctgtgcatgac 52445178  T
Q  201 cctaatttgcatcatgcactgctccacggacttgtcagccatgtcatgctcgtacacaatgtcattcttgatgacatccatatgatattcatgctca 297  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  52445179 cttaatttgcatcatgcactgctccacgtacttgtcagccatgtcatgctcgtacataatgtcattcttgatgacatccatatgatatccatgctca 52445275  T

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