View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9679_low_28 (Length: 294)
Name: NF9679_low_28
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 2883410 - 2883676
Alignment:
| Q |
19 |
agccatcaccacattcttccttagctaagaagccctcatgaaaatgcatacatcttattttattacatactatagatctcaatgctccacccaattaaca |
118 |
Q |
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| T |
2883410 |
agccatcaccacattcttccttagctaagaagccctcatgaaaatgcatacatcttattttattacatactatagatctcaatgctccacccaattaaca |
2883509 |
T |
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| Q |
119 |
caaagaaacaacacaagaatagaaccatccatcacatgccaannnnnnnnnnnnnggcactttnnnnnnnnccccatatgtcttcttttgatttcacacg |
218 |
Q |
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| T |
2883510 |
caaagaaacaacacaagaatagaaccatccatcacatgccaatttttttttttttggcactttaaaaaaaaccccatatgtcttgttttgatttcacacg |
2883609 |
T |
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| Q |
219 |
aagaagagatactattaatacaaagacaacattcaaacaatgaagcattgaatccgacacaaacacc |
285 |
Q |
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| T |
2883610 |
aagaagagatactattaatacaaagacaacattcaaacaatgaagcattgaatccgacacaaacacc |
2883676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 2864192 - 2864465
Alignment:
| Q |
19 |
agccatcaccacattcttccttagctaagaagccctcatgaaaatgcatacatcttattttattacatactatagatctcaatgctccacccaattaaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2864192 |
agccatcaccacattcttccttagctaagaagccctcatgaaaatgcatacatcttattttattacatactatagatctcaatgctccacccaattaaca |
2864291 |
T |
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| Q |
119 |
caaagaaacaacacaagaatagaaccatccatcacatgccaa---nnnnnnnnnnnnnggcactttnnnnnnnnccccatatgtcttcttttgatttcac |
215 |
Q |
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| T |
2864292 |
caaagaaacaacacaagaatagaaccatccatcaaatgccaattttttttttttttttggcactttaaaaaaaaccccatatgtcttgttttgatttcac |
2864391 |
T |
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| Q |
216 |
acgaagaagagatactattaatacaaagacaacattcaaacaatgaagcattgaatccgacacaaacaccaaac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2864392 |
acgaagaagagatactattaatacaaagacaacattcaaacaatgaagcattgaatccgacacaaacaccaaac |
2864465 |
T |
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