View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9679_low_3 (Length: 551)

Name: NF9679_low_3
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9679_low_3
NF9679_low_3
[»] chr3 (15 HSPs)
chr3 (1-533)||(18031272-18031804)
chr3 (195-432)||(27401318-27401555)
chr3 (205-513)||(26117123-26117428)
chr3 (205-337)||(18081285-18081417)
chr3 (205-501)||(26239399-26239692)
chr3 (205-513)||(26145127-26145432)
chr3 (211-280)||(26183797-26183866)
chr3 (211-280)||(26212404-26212473)
chr3 (348-441)||(27370330-27370423)
chr3 (205-272)||(26624398-26624465)
chr3 (205-260)||(18723482-18723537)
chr3 (205-270)||(27370190-27370255)
chr3 (205-260)||(27343892-27343947)
chr3 (348-443)||(28079459-28079554)
chr3 (348-513)||(28178082-28178247)
[»] scaffold0854 (2 HSPs)
scaffold0854 (348-513)||(4284-4449)
scaffold0854 (205-260)||(4534-4589)
[»] scaffold1344 (1 HSPs)
scaffold1344 (205-260)||(579-634)
[»] scaffold0043 (1 HSPs)
scaffold0043 (205-260)||(73306-73361)
[»] chr7 (1 HSPs)
chr7 (205-272)||(8694815-8694882)


Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 18031804 - 18031272
Alignment:
Q  1 tacaagtattgtaggaaaacaacagaggatcttcgacgaactaaatttgagcgtgatttcggacatctcttggcaaagattgatgaacttgttaaagatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031804 tacaagtattgtaggaaaacaacagaggatcttcgacgaactaaatttgagcgtgatttcggacatctcttggcaaagattgatgaacttgttaaagatg 18031705  T
Q  101 aacctggtgaacattacatttcagaactgcaatgccacaaagactatgaacccaagtactgtatggaagtacaagagattcttcggcgatgtcaaattaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031704 aacctggtgaacattacatttcacaactgcaatgccacaaagactatgaacccaagtactgtatggaagtacaagagattcttcggcgatgtcaaattaa 18031605  T
Q  201 cagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagtta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031604 cagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagtta 18031505  T
Q  301 ctcatagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031504 ctcatagacactaaacatattgattctcaagtaccaaatgtttttttctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgt 18031405  T
Q  401 gcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031404 gcaacggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatct 18031305  T
Q  501 ctgcaagctaaaggaactgactctagaatcatg 533  Q
    |||||||||||||||||||||||||||||||||    
T  18031304 ctgcaagctaaaggaactgactctagaatcatg 18031272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 195 - 432
Target Start/End: Complemental strand, 27401555 - 27401318
Alignment:
Q  195 aattaacagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactg 294  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| || |||||||| ||  |   | | |||||||     
T  27401555 aattaacagtggatggagaaatctcatgcctgaggtggttcctatagaaaatggcatgaatgatcttgttaagcttcacctgtcatggggttcagaacta 27401456  T
Q  295 aagttactcatagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaag 394  Q
     |||  ||||||||||||||||||||||||||||||||||||||||       |||||||||  |||||||| |||||      ||| | || |||||||    
T  27401455 cagtgcctcatagacactaaacatattgattctcaagtaccaaatgttgtcttctccaagttggttgtactagagctctttaaaatggataagttggaag 27401356  T
Q  395 aattgtgcaacggttcaatcttcttggactctctgaac 432  Q
    |||||||||||||||| |||| | ||||||||||||||    
T  27401355 aattgtgcaacggttccatctccatggactctctgaac 27401318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 205 - 513
Target Start/End: Complemental strand, 26117428 - 26117123
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 304  Q
    ||||||| |||||||||||||||||| |||||||||||  | ||||||||||||||  ||||||||   |||| |||   | || ||||  |||  ||      
T  26117428 ggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgccttg 26117329  T
Q  305 tagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaa 404  Q
    ||||||||||||||||| ||||||||||||||| ||       |||||||||  ||||||||||||| ||| | ||| |    ||||||||||| |||||    
T  26117328 tagacactaaacatattaattctcaagtaccaattgtttt---ctccaagttggttgtactaaagcttaagagaatggaagctttggaagaattatgcaa 26117232  T
Q  405 cggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgc 504  Q
     ||| | |||| ||| |||||  |||||||||||||| | |||| | | || |||||||| | ||| |||||| |||||||||||||||| |||||| ||    
T  26117231 tggtcccatctcctttgactcaatgaacaatttagaggagctatatgtgaacgagtgtaaaaatttgcaaagcttgtttaaatgcagcctaaatctcagc 26117132  T
Q  505 aagctaaag 513  Q
    || ||||||    
T  26117131 aatctaaag 26117123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 18081417 - 18081285
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 304  Q
    ||||||||||||||||||||||| || |||||||||||  | ||||||||||||||  |||||||||| ||| || ||||| || ||||  |||  ||||    
T  18081417 ggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctca 18081318  T
Q  305 tagacactaaacatattgattctcaagtaccaa 337  Q
    || ||| | ||||||||||||||||||||||||    
T  18081317 tatacattgaacatattgattctcaagtaccaa 18081285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 501
Target Start/End: Complemental strand, 26239692 - 26239399
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 304  Q
    ||||||| |||||||||||||||||| |||||||||||  | ||||||||||||||  || |||||||  || ||||   | || ||||  |||  ||      
T  26239692 ggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtaccttg 26239593  T
Q  305 tagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaa 404  Q
    ||||||||||||||||| ||||||||||||||| ||       |||||||||  |||||||||| ||  || | ||| |    ||||||||||| |||||    
T  26239592 tagacactaaacatattaattctcaagtaccaattgtttt---ctccaagttggttgtactaaatcttgagagaatggaagctttggaagaattatgcaa 26239496  T
Q  405 cggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctc 501  Q
     ||| | |||  ||| |||||   ||||||||||||||| |||||||||||||||||| | | ||| | |||| |||||||||||||||| ||||||    
T  26239495 tggtcccatcgcctttgactcaacgaacaatttagagaagctatctatcaaggagtgtgaaaatttgcgaagcttgtttaaatgcagcctaaatctc 26239399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 205 - 513
Target Start/End: Complemental strand, 26145432 - 26145127
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca 304  Q
    ||||| |||||||||||||| |||||||||||||||||  | ||||||||||||||  ||||||||||  ||  |||   | || ||||  |||  ||      
T  26145432 ggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgcctag 26145333  T
Q  305 tagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaa 404  Q
    ||||||||||||||||| ||||||||||||||| ||       ||| |||||  |||||||||||||  || | ||| |    ||||||||||| |||||    
T  26145332 tagacactaaacatattaattctcaagtaccaattg---ttttctctaagttggttgtactaaagcttgagagaatggaagctttggaagaattatgcaa 26145236  T
Q  405 cggttcaatcttcttggactctctgaacaatttagagaatctatctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgc 504  Q
     ||| | |||| ||| |||||  |||||| ||||||| | || | ||| ||||||||| | | ||| |||||| |||||||||||||||| |||||| ||    
T  26145235 tggtcccatctcctttgactcaatgaacactttagaggagctgtatattaaggagtgtgaaaatttgcaaagcttgtttaaatgcagcctaaatctcagc 26145136  T
Q  505 aagctaaag 513  Q
    || ||||||    
T  26145135 aatctaaag 26145127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 26183866 - 26183797
Alignment:
Q  211 agaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaag 280  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||  |||||||||| |||||||    
T  26183866 agaaatctcatgccagagatggttcctatagaacaaggtatgaatgatctaattgagcttcatttggaag 26183797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 26212473 - 26212404
Alignment:
Q  211 agaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaag 280  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||||  |||||||||| |||||||    
T  26212473 agaaatctcatgccagagatggttcctataaaacaaggtatgaatgatctaattgagcttcatttggaag 26212404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 441
Target Start/End: Original strand, 27370330 - 27370423
Alignment:
Q  348 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagag 441  Q
    |||||||||  |||||||||| |||||||  |||||||| ||||||||||| ||||| ||| | |||||||  |||||| ||||||||||||||    
T  27370330 ctccaagttggttgtactaaaactcaaggaaatgaagaatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagag 27370423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 26624398 - 26624465
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttca 272  Q
    |||||||||||||||||||| ||||| ||||||||||||   |||||||||||| || ||||||||||    
T  26624398 ggatggagaaatctcatgcctgagattgttcctatagaactaggtatgaatgatattgttgagcttca 26624465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 18723537 - 18723482
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 260  Q
    |||||||||||||||||||| | ||| ||| ||||||| |||||||||||||||||    
T  18723537 ggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatct 18723482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 27370190 - 27370255
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagctt 270  Q
    |||||||||||||||||||| | |||  |||||||||| |||||||||||| ||||  ||||||||    
T  27370190 ggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgagctt 27370255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 27343892 - 27343947
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 260  Q
    |||||||||||||||||||| | |||  ||||||| || |||||||||||||||||    
T  27343892 ggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatct 27343947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 443
Target Start/End: Original strand, 28079459 - 28079554
Alignment:
Q  348 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaa 443  Q
    |||||||||  |||||||||||||||| || ||| | || ||||||||||||| ||| ||| |  | | ||| ||||||||||||| |||||||||    
T  28079459 ctccaagttggttgtactaaagctcaaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagagaa 28079554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 513
Target Start/End: Original strand, 28178082 - 28178247
Alignment:
Q  348 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatcta 447  Q
    |||||||||  |||||||||||||||| || ||| | || || |||||||||| ||| ||| |  | | ||| ||||||||||||| ||||||||| ||     
T  28178082 ctccaagttggttgtactaaagctcaaaggaatggataatttagaagaattgttcaatggtcctgtttcctttgactctctgaacagtttagagaagctg 28178181  T
Q  448 tctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgcaagctaaag 513  Q
    || ||||| || |||||   |||  ||||| | ||||| |||| ||| || |||||||| ||||||    
T  28178182 tccatcaatgaatgtaaacatttaaaaagcttatttaagtgcaacctaaacctctgcaatctaaag 28178247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 348 - 513
Target Start/End: Complemental strand, 4449 - 4284
Alignment:
Q  348 ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagagaatcta 447  Q
    |||||||||  |||||||| | |||||||  |||||||| ||||||||||| ||||| ||| | |||||||| |||||| |||||||||||||| | |||    
T  4449 ctccaagttggttgtactagaactcaaggaaatgaagaatttggaagaattatgcaatggtcccatcttctttgactctatgaacaatttagaggagcta 4350  T
Q  448 tctatcaaggagtgtaacatttttcaaagcctgtttaaatgcagcctgaatctctgcaagctaaag 513  Q
     |||||  | | |||   ||||| | |||| |||||||||||||| | ||| ||||||| ||||||    
T  4349 actatcttgaaatgtggaattttgcgaagcttgtttaaatgcagcataaatttctgcaatctaaag 4284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 4589 - 4534
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 260  Q
    |||||||||||||||||||| | ||| ||||||||||| |||||||||||| ||||    
T  4589 ggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatct 4534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 579 - 634
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 260  Q
    |||||||||||||||||||| | |||  |||||||||| |||||||||||||||||    
T  579 ggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatct 634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 73361 - 73306
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct 260  Q
    |||||||||||||||||||| | ||| ||| ||||||| |||||||||||||||||    
T  73361 ggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatct 73306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 8694882 - 8694815
Alignment:
Q  205 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttca 272  Q
    |||||||||||| |||| || ||||| |||||||| ||  ||||||||||||||||  ||||||||||    
T  8694882 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttca 8694815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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