View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9679_low_30 (Length: 266)
Name: NF9679_low_30
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 21546147 - 21546336
Alignment:
| Q |
4 |
gagtttggagttcatgtaactttcatcaacctagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgc |
103 |
Q |
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| T |
21546147 |
gagtttagagttcatgtaactttcatcaacctagtgaaaatcaatagtgaaggaacaatttctcttatcaattgagacaccaaaacagcatgacacatgc |
21546246 |
T |
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| Q |
104 |
catttgnnnnnnnnnnnnnnncaattataggaaatcgattgtaaga-caaaggt--tacaataatggccttctacattcactcaataatgat |
192 |
Q |
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| T |
21546247 |
catttg--aaaaaaaaaaaaacaattatagaaaatcgattgcaagatcaaaggttatacaataatggccttccacattcactcaataatgat |
21546336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 7498637 - 7498563
Alignment:
| Q |
35 |
tagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
109 |
Q |
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| T |
7498637 |
tagtgaaaatgaatagcaaagaaacaatttctcttatcaattgtgacaccaaaacagcatgacacatgccatttg |
7498563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 21546519 - 21546556
Alignment:
| Q |
204 |
ggcagctgataggagcgattaaaggtggatttgatgtg |
241 |
Q |
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| T |
21546519 |
ggcagctgataggagcgattaaaggtggatttgatgtg |
21546556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 37685124 - 37685198
Alignment:
| Q |
35 |
tagtgaaaatcaatagtgaaggaacaatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
109 |
Q |
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| T |
37685124 |
tagtgaaaatgaatagcaaagaaacaatttcttttatcaattgtgacaccaaaacagcatgacacatgccatttg |
37685198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 46885186 - 46885136
Alignment:
| Q |
59 |
caatttctcttatcaattgtgacaccaaaacagcatgagacatgccatttg |
109 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
46885186 |
caatttctcttatcaattgtgacaccaaaactacatgacacatgccatttg |
46885136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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