View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9679_low_34 (Length: 257)

Name: NF9679_low_34
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9679_low_34
NF9679_low_34
[»] chr5 (1 HSPs)
chr5 (1-239)||(19032449-19032689)
[»] chr7 (4 HSPs)
chr7 (21-107)||(46994410-46994496)
chr7 (29-107)||(24681652-24681730)
chr7 (17-82)||(7775043-7775108)
chr7 (17-81)||(19494412-19494476)
[»] chr4 (4 HSPs)
chr4 (29-107)||(28304063-28304141)
chr4 (21-107)||(5027443-5027529)
chr4 (17-81)||(13069984-13070047)
chr4 (17-81)||(47237814-47237878)
[»] chr8 (3 HSPs)
chr8 (21-81)||(35689527-35689587)
chr8 (17-100)||(16314329-16314412)
chr8 (17-57)||(31301158-31301198)
[»] chr3 (1 HSPs)
chr3 (21-81)||(43657069-43657129)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 19032689 - 19032449
Alignment:
Q  1 agaaatgtcatgaacaactcttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgtgtgactcatcttgatttaa 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19032689 agaaatgttatgaacaactcttttattcgatgaaatcgatctatgttccaccactttaagtcagatccatttttaaagtgtgtgactcatcttgatttaa 19032590  T
Q  101 gtcaatagagagtggttgttaaatagagtat--aaaaaacaggtctttgcagaattttaccaatcattgcctattgttaaaaaataagtcgcac--agtg 196  Q
    ||||||||||| |||  |||||||| ||| |  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  19032589 gtcaatagagactgg--gttaaatatagttttaaaaaaagtggtctttgcagaattttaccaatcattgcctattgttaaaaaataagtcgcacatagtg 19032492  T
Q  197 attcatataaacagaatagaaagagaagaaaaaaccacacatt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19032491 attcatataaacagaatagaaagagaagaaaaaaccacacatt 19032449  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 46994496 - 46994410
Alignment:
Q  21 ttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgtgtgactcatcttgatttaagtcaata 107  Q
    ||||||| ||||||||| || ||||  |||||||||||||| | |||||||| ||||||||| ||| || | ||||||||| |||||    
T  46994496 ttttattagatgaaatcaatgtatgacccaccactttaagtgatatccatttccaaagtgtgagacccaccatgatttaagccaata 46994410  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 24681652 - 24681730
Alignment:
Q  29 gatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgtgtgactcatcttgatttaagtcaata 107  Q
    ||||||||  || ||||| ||| |||||||||| |||  |||||| |||||||| ||| | ||||||||||||||||||    
T  24681652 gatgaaattaatgtatgtcccatcactttaagtaagactcatttttaaagtgtgagacccgtcttgatttaagtcaata 24681730  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 7775043 - 7775108
Alignment:
Q  17 actcttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgtg 82  Q
    ||||||||||| ||||||||| || ||||| ||||||||||  || || || ||||||||||||||    
T  7775043 actcttttattggatgaaatcaatgtatgtcccaccactttgtgtgagttcaattttcaaagtgtg 7775108  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19494476 - 19494412
Alignment:
Q  17 actcttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgt 81  Q
    ||||||||||| | ||||||| || ||||| ||||||||||| ||  | ||||||||||||||||    
T  19494476 actcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgt 19494412  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 28304141 - 28304063
Alignment:
Q  29 gatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgtgtgactcatcttgatttaagtcaata 107  Q
    ||||||||| ||  |||| |||||||||| |||  | ||||||||||||||||||||  || |||||||||||||||||    
T  28304141 gatgaaatcaatgcatgtcccaccacttttagtggggtccattttcaaagtgtgtgatccaccttgatttaagtcaata 28304063  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 5027529 - 5027443
Alignment:
Q  21 ttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgtgtgactcatcttgatttaagtcaata 107  Q
    ||||||| |||| |||| || ||||  ||| ||||||||||   ||| ||||||||| |||| |||||||||||||||||| |||||    
T  5027529 ttttattggatgtaatcaatatatgacccatcactttaagttgaatcgattttcaaaatgtgagactcatcttgatttaagccaata 5027443  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13069984 - 13070047
Alignment:
Q  17 actcttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgt 81  Q
    ||||||||||| | ||||||| || ||||||||||||||||| ||  | ||||||||||||||||    
T  13069984 actcttttattgg-tgaaatcaatgtatgttccaccactttatgtgggttccattttcaaagtgt 13070047  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 47237878 - 47237814
Alignment:
Q  17 actcttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgt 81  Q
    ||||||||||| ||||||||| || ||||| |||||||||||  | || | ||||||||||||||    
T  47237878 actcttttattggatgaaatcaatatatgtcccaccactttatataagtttcattttcaaagtgt 47237814  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 35689527 - 35689587
Alignment:
Q  21 ttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgt 81  Q
    ||||||| ||||||||| || ||||| ||||||||||| || || ||||||||||||||||    
T  35689527 ttttattggatgaaatcaatgtatgtcccaccactttatgtgagttccattttcaaagtgt 35689587  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 16314412 - 16314329
Alignment:
Q  17 actcttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgtgtgactcatcttgatttaa 100  Q
    ||||||||||| ||| ||||  || ||||||||||||||||||||   ||||||||| ||| |||| ||| || ||||||||||    
T  16314412 actcttttattggataaaattaatgtatgttccaccactttaagttgaatccatttttaaaatgtgagacccaccttgatttaa 16314329  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 31301158 - 31301198
Alignment:
Q  17 actcttttattcgatgaaatcgatctatgttccaccacttt 57  Q
    ||||||||||| ||||||||| || ||||||||||||||||    
T  31301158 actcttttattggatgaaatcaatgtatgttccaccacttt 31301198  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 43657129 - 43657069
Alignment:
Q  21 ttttattcgatgaaatcgatctatgttccaccactttaagtcagatccattttcaaagtgt 81  Q
    ||||||| ||||||||| || ||||| ||||||||||| || || ||||||| ||||||||    
T  43657129 ttttatttgatgaaatcaatgtatgtcccaccactttatgtgagttccatttccaaagtgt 43657069  T

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