View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9679_low_36 (Length: 244)
Name: NF9679_low_36
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_36 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27521340 - 27521568
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521340 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
27521439 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521440 |
tggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
27521539 |
T |
|
| Q |
201 |
gtttgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27521540 |
gtttgtgagggatcaacatggattcttgt |
27521568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27462095 - 27461867
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27462095 |
gctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
27461996 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27461995 |
tggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
27461896 |
T |
|
| Q |
201 |
gtttgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27461895 |
gtttgtgagggatcaacatggattcttgt |
27461867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27482234 - 27482006
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27482234 |
gctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
27482135 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
27482134 |
tggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgttggaataatcatggattgtttct |
27482035 |
T |
|
| Q |
201 |
gtttgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27482034 |
gtttgtgagggatcaacatggattcttgt |
27482006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 18986195 - 18985967
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18986195 |
gctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggt |
18986096 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986095 |
tggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
18985996 |
T |
|
| Q |
201 |
gtttgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
18985995 |
gtttgtgagggatcaccatggattcttgt |
18985967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1758243 - 1758015
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1758243 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
1758144 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758143 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
1758044 |
T |
|
| Q |
201 |
gtttgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1758043 |
gtttgtgagggatcaacatggattcttgt |
1758015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 29568374 - 29568611
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
29568374 |
gctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagt |
29568473 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtg---------tgatgatgaagcattgatgatgttggaataatcatgg |
191 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568474 |
tggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgatgatgatgaagcattgatgatgttggaataatcatgg |
29568573 |
T |
|
| Q |
192 |
attgtttctgtttgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568574 |
attgtttctgtttgtgagggatcaacatggattcttgt |
29568611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 29168350 - 29168141
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
29168350 |
gctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagt |
29168251 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatg---atgaagcattgatgatgttggaataatcatggattgtt |
197 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29168250 |
tggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgttggaataatcatgctttgtt |
29168151 |
T |
|
| Q |
198 |
tctgtttgtg |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
29168150 |
tctgtttgtg |
29168141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 29569708 - 29569919
Alignment:
| Q |
4 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
103 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
104 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtg--------------tgatgatgttggaataatcatggattgtttgtgtt |
29569893 |
T |
|
| Q |
204 |
tgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
29569894 |
tgtgagggatcaaaatggattcttgt |
29569919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29425391 - 29425232
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29425391 |
gctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
29425292 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
157 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29425291 |
tggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
4 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
103 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
104 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
163 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 25518576 - 25518348
Alignment:
| Q |
4 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
103 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25518576 |
aagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttgg |
25518477 |
T |
|
| Q |
104 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg---aagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518476 |
tgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgttggaataatcatggattgtttct |
25518377 |
T |
|
| Q |
201 |
gtttgtgagggatcaacatggattcttgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25518376 |
gtttgtgagggatcaacatggattcttgt |
25518348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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