View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9679_low_38 (Length: 241)
Name: NF9679_low_38
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 45894593 - 45894795
Alignment:
| Q |
21 |
gtgaaatttcatacacacttcagcccgtactattcatcattttccaaatatatattatccatttaatggtttaaatctgcagaattttatgcatatacca |
120 |
Q |
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| T |
45894593 |
gtgaaatttcgtacacacttcagcccgtactatttatcatttttcaaatatatattatccatttaatggtttaaatctgcagaatgttatgcatttacta |
45894692 |
T |
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| Q |
121 |
ggaaacttccatttaaaaagtgctatcgttagcaggttcaaccactccacnnnnnnngtaagatcgttccttaattaaattaaactaaaccattctgtcc |
220 |
Q |
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| T |
45894693 |
ggaaacttccatttaaaaagtgctatcgtttgcaggttcaaccactccacaaaaaaagtaagatcgttccttaattaaattaaactaaaccattctgtcc |
45894792 |
T |
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| Q |
221 |
att |
223 |
Q |
| |
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||| |
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| T |
45894793 |
att |
45894795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 24435227 - 24435184
Alignment:
| Q |
22 |
tgaaatttcatacacacttcagcccgtactattcatcattttcc |
65 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24435227 |
tgaaatttcatacacacttcagcccgtactatttatcattttcc |
24435184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 7114917 - 7114876
Alignment:
| Q |
24 |
aaatttcatacacacttcagcccgtactattcatcattttcc |
65 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
7114917 |
aaatttcgtacacacttcagcccgtactatttatcattttcc |
7114876 |
T |
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