View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9679_low_5 (Length: 458)
Name: NF9679_low_5
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 185 - 440
Target Start/End: Complemental strand, 28451585 - 28451332
Alignment:
| Q |
185 |
cataacctccaattattgccgtccttatttagtttgcaactttatgatgttgtcatcatatacagaatatacttcattatagtcacatctttttcttcca |
284 |
Q |
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| T |
28451585 |
cataacctccaactattgccgtccttatttaatttgcaactttatgatgttgtcatcatatacagaatatactccattatagtcacatctatttcttcca |
28451486 |
T |
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| Q |
285 |
aagtttactaatattagtaatattattttgtcatataaatccaatgtaaggtgaagtattcttgtttttgcttttgaacaaaacaataagtccattaata |
384 |
Q |
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| T |
28451485 |
aagtttactaatattagtaatattattttgtcatataaatccaatggaagatgaagcattcttgtttttgcttttgaacaaaacaataagtccattaata |
28451386 |
T |
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| Q |
385 |
aaaaatgaagttaggggcccctctccaattatagaatgcgaggtgtacattcttct |
440 |
Q |
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| T |
28451385 |
aaaaatgaagttaggggtcc--ctccaattatagaatgcgaggtgtacattcttct |
28451332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 28451769 - 28451650
Alignment:
| Q |
1 |
aagctagagagatcaaataaatgatatcgacatgcatgcaaatgtgacggtaacttcaagtttgtctcctaaaaggagcatcaataagccggcgcttaag |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451769 |
aagctagagagatcaaataaatgatatagacatgcatgcaaatgtgacggtaacttcaagtttgtctcctaaaaggagcatcaataagccggcgcttaag |
28451670 |
T |
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| Q |
101 |
cttagattctacaaataatg |
120 |
Q |
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| T |
28451669 |
cttagattctacaaataatg |
28451650 |
T |
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