View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9679_low_9 (Length: 405)
Name: NF9679_low_9
Description: NF9679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9679_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 28614022 - 28614414
Alignment:
| Q |
1 |
tactaggtattgacatttcgccttaacttttaccatgctatgagttcctcgcgtgtcctaatcagattctgaaatcagaattttttgaccagaggttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
28614022 |
tactaggtattgacatttcgccttaacttttaccatgctatgagttcctcgcgtgtcctaatcagattctaaaatcagaatttttttaccagaggttaac |
28614121 |
T |
|
| Q |
101 |
ataaacataaacgaaaaaataaactgaaatggcgagtattttggtgtttaaatcagatgaatatttgacacacccctaattcaaacctagtacccgccca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28614122 |
ataaacataaacgaaaaaataaactgaaatggcgagtattttggtgtttaaatcagatgaatttttgacacacccctaattcaaacccagtacccgccca |
28614221 |
T |
|
| Q |
201 |
cttccactcaaacttattatacc-gccgctgcatgagcgaaattaaagggaagcattcaggtttctccctattcattttcctgtgcactgcaattttgca |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28614222 |
tttccactcaaacttattataccggccgctgcatgagcgaaattaaagggaagcattcaggtttctccctattcattttcctgtgcattgcaattttgca |
28614321 |
T |
|
| Q |
300 |
tccaacttcataaacttactatttttaattaatttaaggggtgaatatccaaaaataatagtcctgacatttccaaattaggtacatattagt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28614322 |
tccaacttcataaacttactatttttaattaatttaaggggtgaatatccaaaaataatagtcctgacatttccaaattaggtacatattagt |
28614414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University