View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9680_high_1 (Length: 283)
Name: NF9680_high_1
Description: NF9680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9680_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 4132949 - 4132674
Alignment:
| Q |
1 |
ctgtgtggagtgtaattcaaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgtattctggcgcagcacgttgatgtctttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
4132949 |
ctgtgtggagtgtaattcaaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgtattttggcgcagcatgttgatgtctttct |
4132850 |
T |
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| Q |
101 |
cagcagagtgcagaaacgattgggaatatttgtgctctgactattggattatttctctttatggagggtgtgactttgagccaatagttctcaaacttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132849 |
cagcagagtgcagaaacgattgggaatatttgtgctctgactattggattatttctctttatggagggtgtgactttgagccaatagttctcaaacttca |
4132750 |
T |
|
| Q |
201 |
atgaatgtgattcgtgagaattggaagtagctagcttttcattttgtgattgtagttcgttctgttttctctgctc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4132749 |
atgaatgtgattcgtgagaattggaagtagctagcttttcattttgcgattgtagttcgttctgttttctctgctc |
4132674 |
T |
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