View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9680_high_3 (Length: 253)
Name: NF9680_high_3
Description: NF9680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9680_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 35762380 - 35762145
Alignment:
| Q |
18 |
gagcagagaagtaacctaatcatattaaccatggctatggtggataaaaacactacaatgtattaccaatttggtgtaggaaacaagtaatatagatgct |
117 |
Q |
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| T |
35762380 |
gagcagagaagtaacctagtcatattaaccatggctatggtggataaaaacactacaatgtattaccaatttggtgtaggaaacaagtaatatagattct |
35762281 |
T |
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| Q |
118 |
ttgannnnnnnaaccatgtagtctttgattcgttatcggttgatgcgtatagaaaaatatatgagatatgtaaatattattcaatcccaaattaatggat |
217 |
Q |
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|||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35762280 |
ttgatttttttaaccatgtagtctttgattcgttattggctgatgcgtatagaaaaatatatgagatatgtaaatattattcaatcccaaattaatggat |
35762181 |
T |
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| Q |
218 |
ttgatgaagatgatacaacaaaatgtgggtttattc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35762180 |
ttgatgaagatgatacaacaaaatgtgggtttattc |
35762145 |
T |
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