View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9680_low_1 (Length: 487)
Name: NF9680_low_1
Description: NF9680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9680_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 34274941 - 34274468
Alignment:
| Q |
1 |
agcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgcatcaggaacgacttctgcacttgtaatgtcgatttgttcctcagga |
100 |
Q |
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| T |
34274941 |
agcaaacgaacttgaatactcagttgcatcagggtcctcaatttcgttagatgcatcaggaacgacttctgcacttgtaatgtcgatttgttcctcagga |
34274842 |
T |
|
| Q |
101 |
acggactccaccttaatgacatgcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaact |
200 |
Q |
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| T |
34274841 |
acggactccaacttaatgacatgcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaact |
34274742 |
T |
|
| Q |
201 |
tgttacgcataacatactgctgttatttatttgacagtgcatttatattattatattcttctatagatcagactggatttcgatagatcagtcaatagaa |
300 |
Q |
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| T |
34274741 |
tgttacgtataacatactgctgttatttatttgacagtgcatttatattattatatttttctatagatcagactggatttcgatagatcagtcaatagaa |
34274642 |
T |
|
| Q |
301 |
tcaatatctatgaacataatgaagatcaaaattcaaatatcaagttcatttttcatagctaagatgattacattgaagatgtgaaatttaacgtgcatgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34274641 |
tcaatatctatgaacataatgaagatcaaaattcaaatatcaagttcatttgtcatagctaagatgattacattgaagatgtgaaattcaacgtgcatgt |
34274542 |
T |
|
| Q |
401 |
aatgg---tggtagtagaagaaagg--gagagagacattacctgtagagagaaatggaatagagaggcgagggt |
469 |
Q |
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| T |
34274541 |
aatggtggtggtagtagaagaaagggagagagagacgttacctgtagagagaaatggaatagagaggcgagggt |
34274468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 20229778 - 20229857
Alignment:
| Q |
123 |
gcttagccatcttcacctttttagtttcctgttctgaaccaaaatgcacaagtaaattcaaccaattcaaaatcaacttg |
202 |
Q |
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|||||||||||||||||||||||||| ||||||| || | |||| || || ||||||||| |||||||||| |||||| |
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| T |
20229778 |
gcttagccatcttcacctttttagttacctgttcaaaatctaaattcataactaaattcaatgaattcaaaattaacttg |
20229857 |
T |
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