View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9680_low_2 (Length: 317)
Name: NF9680_low_2
Description: NF9680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9680_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 40 - 304
Target Start/End: Original strand, 34706239 - 34706503
Alignment:
| Q |
40 |
aagcagtatataaagttccattttgaactaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34706239 |
aagcagtatataaagttccattttgaactaagctcaatgtagcgtgtaactgttttaaggtttctgaattgcggtaacttctgatattgacattgtttat |
34706338 |
T |
|
| Q |
140 |
ttcagtgtcaatgataaatatgatcagaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgatttatgaactgtgt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34706339 |
ttcagtgtcaatgataaatatgatcagaagcattacaatttgcgttgaaaatgcttattataggatcaattttgtaaacaccgcgatttatgaactgtgt |
34706438 |
T |
|
| Q |
240 |
ttgtcctctctaattgagtaaagtaggatcaccactatttagaacgatagttataagcaatgtct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34706439 |
ttgtcctctctaattgagtaaagtaggatcaccactatttagaacgatatttataagcaatgtct |
34706503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 34706599 - 34706864
Alignment:
| Q |
41 |
agcagtatataaagttccattttgaactaagctcaatgtagcgtgtaaccgtttt-aaggtttctgaattgcgataacttctgatattgacattgtttat |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
34706599 |
agcagtatataaagctccattttgaactaagctcaatgcagcgtgtaaccgtttttaaggtttttgaattgcggtgacttctgatattgacattttttat |
34706698 |
T |
|
| Q |
140 |
ttcagtgtcaatgataaatatgatcagaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgattta-tgaactgtg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||| ||||| || ||| ||| ||||| |||| |||| |
|
|
| T |
34706699 |
ttcagtgtcaatgataaatatgatcagaagcattaatattttcggtgaaaatgcttattataggatcaattttatagacaacgcaatttattgaattgtg |
34706798 |
T |
|
| Q |
239 |
tttgtcctctctaattgagtaaagtaggatcaccactatttagaacgatagttataagcaatgtct |
304 |
Q |
| |
|
| |||||| | |||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
34706799 |
tctgtcctgtttaattgagcaaagtaggatcaccgctatttagaaagatagttataagcaatgtct |
34706864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 34706035 - 34706165
Alignment:
| Q |
43 |
cagtatataaagttccattttgaactaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttc |
142 |
Q |
| |
|
|||||||||||| |||||||| ||||||| || ||||||| || |||||||||||||||| ||||||||| | |||| || ||||||| |||| ||||| |
|
|
| T |
34706035 |
cagtatataaagctccatttttaactaagttctatgtagcatgaaaccgttttaaggtttttgaattgcggtgacttaagagattgacaatgttgatttc |
34706134 |
T |
|
| Q |
143 |
agtgtcaatgataaatatgatcagaagcatt |
173 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |
|
|
| T |
34706135 |
aacgtcaatgataaatatgatcggaagcatt |
34706165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 40 - 304
Target Start/End: Original strand, 41869448 - 41869712
Alignment:
| Q |
40 |
aagcagtatataaagttccattttgaactaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41869448 |
aagcagtatataaagttccattttgaactaagctcaatgtagcgtgtaactgttttaaggtttctgaattgcggtaacttctgatattgacattgtttat |
41869547 |
T |
|
| Q |
140 |
ttcagtgtcaatgataaatatgatcagaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgatttatgaactgtgt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41869548 |
ttcagtgtcaatgataaatatgatcagaagcattacaatttgcgttgaaaatgcttattataggatcaattttgtaaacaccgcgatttatgaactgtgt |
41869647 |
T |
|
| Q |
240 |
ttgtcctctctaattgagtaaagtaggatcaccactatttagaacgatagttataagcaatgtct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41869648 |
ttgtcctctctaattgagtaaagtaggatcaccactatttagaacgatatttataagcaatgtct |
41869712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 41869808 - 41870073
Alignment:
| Q |
41 |
agcagtatataaagttccattttgaactaagctcaatgtagcgtgtaaccgtttt-aaggtttctgaattgcgataacttctgatattgacattgtttat |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
41869808 |
agcagtatataaagctccattttgaactaagctcaatgcagcgtgtaaccgtttttaaggtttttgaattgcggtgacttctgatattgacattttttat |
41869907 |
T |
|
| Q |
140 |
ttcagtgtcaatgataaatatgatcagaagcattacaatttgcgttgaaaatgcatattataggatctattttgtaaacaccgcgattta-tgaactgtg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||| ||||| || ||| ||| ||||| |||| |||| |
|
|
| T |
41869908 |
ttcagtgtcaatgataaatatgatcagaagcattaatattttcggtgaaaatgcttattataggatcaattttatagacaacgcaatttattgaattgtg |
41870007 |
T |
|
| Q |
239 |
tttgtcctctctaattgagtaaagtaggatcaccactatttagaacgatagttataagcaatgtct |
304 |
Q |
| |
|
| |||||| | |||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
41870008 |
tctgtcctgtttaattgagcaaagtaggatcaccgctatttagaaagatagttataagcaatgtct |
41870073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 28547166 - 28547036
Alignment:
| Q |
43 |
cagtatataaagttccattttgaactaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttc |
142 |
Q |
| |
|
|||||||||||| |||||||| ||||||| || ||||||| || |||||||||||||||| ||||||||| | |||| || ||||||| |||| ||||| |
|
|
| T |
28547166 |
cagtatataaagctccatttttaactaagttctatgtagcatgaaaccgttttaaggtttttgaattgcggtgacttaagagattgacaatgttgatttc |
28547067 |
T |
|
| Q |
143 |
agtgtcaatgataaatatgatcagaagcatt |
173 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |
|
|
| T |
28547066 |
aacgtcaatgataaatatgatcggaagcatt |
28547036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 41869244 - 41869374
Alignment:
| Q |
43 |
cagtatataaagttccattttgaactaagctcaatgtagcgtgtaaccgttttaaggtttctgaattgcgataacttctgatattgacattgtttatttc |
142 |
Q |
| |
|
|||||||||||| |||||||| ||||||| || ||||||| || |||||||||||||||| ||||||||| | |||| || ||||||| |||| ||||| |
|
|
| T |
41869244 |
cagtatataaagctccatttttaactaagttctatgtagcatgaaaccgttttaaggtttttgaattgcggtgacttaagagattgacaatgttgatttc |
41869343 |
T |
|
| Q |
143 |
agtgtcaatgataaatatgatcagaagcatt |
173 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |
|
|
| T |
41869344 |
aacgtcaatgataaatatgatcggaagcatt |
41869374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University