View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9680_low_9 (Length: 244)

Name: NF9680_low_9
Description: NF9680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9680_low_9
NF9680_low_9
[»] chr5 (2 HSPs)
chr5 (1-183)||(22918537-22918721)
chr5 (190-225)||(22918297-22918332)
[»] chr3 (2 HSPs)
chr3 (1-92)||(3522766-3522857)
chr3 (128-183)||(43787478-43787533)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 22918721 - 22918537
Alignment:
Q  1 aaaatatatcatcatcaatttgtttaatatttttcccacgaagacacactttatatgagataactataacttattcctaacacctatatattaatgtatt 100  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22918721 aaaatatatcatcatcagtttgtttaatatttttcccatgaagacacactttatatgagataactataacttattcctatcacctatatattaatgtatt 22918622  T
Q  101 --ttttataggagataaaaattatgtaacttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat 183  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22918621 ttttttataggagataaaaattatgtaacttagtgtggtgaaatatcttgctttacatatctttttaaacttacactcttaatat 22918537  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 22918332 - 22918297
Alignment:
Q  190 attcataacaggttctacatttcttcatgaactcaa 225  Q
    ||||||||||||||||||||||||||||||||||||    
T  22918332 attcataacaggttctacatttcttcatgaactcaa 22918297  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3522857 - 3522766
Alignment:
Q  1 aaaatatatcatcatcaatttgtttaatatttttcccacgaagacacactttatatgagataactataacttattcctaacacctatatatt 92  Q
    |||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3522857 aaaaaatatcatcatcagtttgtttaatatgtttcccatgaagacacactttatataagataactataacttattcctcacacctatatatt 3522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 43787533 - 43787478
Alignment:
Q  128 ttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43787533 ttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat 43787478  T

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