View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9681_high_3 (Length: 460)
Name: NF9681_high_3
Description: NF9681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9681_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 34578418 - 34577992
Alignment:
| Q |
17 |
ggtgatatagaagataattggaagaggtgagaaaatagtaaatgcatatgacatttcaaattcataccttttacaatgtctcttttaacaacataacata |
116 |
Q |
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| T |
34578418 |
ggtgatatagaagataattggaagaggtgagaaaatagtaaatgtatatgacatttcaaattcataccttttacaatgtctcttttaacaacataacata |
34578319 |
T |
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| Q |
117 |
attgaggttaataaagtataagacctcaactcctcaagaattccattcctatttatatatttcaatgtttaattgtttttcttcattttctatgttgtga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578318 |
attgaggttaataaagtataagacctcaactcctcaagaattcctttcctatttatatatttcaatgtttaattgtttttcttcattttctatgttgtga |
34578219 |
T |
|
| Q |
217 |
tcaactgactttattctacctcagcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattagtta |
316 |
Q |
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| T |
34578218 |
tcaactgactttattctacttcagcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattaatta |
34578119 |
T |
|
| Q |
317 |
accttactagaaatgttatgcatattaaaattgatatccttacatttatagcaaaatctagtattaggttcttatatgtgtaattgttatttggatatta |
416 |
Q |
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| T |
34578118 |
acctcactagtaatgttatgcatgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcgtatgtgtcattaatgtttggatatta |
34578019 |
T |
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| Q |
417 |
gatcctgatatgcttgaagttggaaat |
443 |
Q |
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| T |
34578018 |
gatcctgatatgcttgaagttggaaat |
34577992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 34593986 - 34593907
Alignment:
| Q |
239 |
agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatggaatggtaattagttaac |
318 |
Q |
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| T |
34593986 |
agcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaattaac |
34593907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 193 - 443
Target Start/End: Complemental strand, 32600933 - 32600680
Alignment:
| Q |
193 |
ttttcttcattttct-atgttgtgatcaactgactttattcta--cctcagcatgacttctattatagatgcaaacgacaaatgggcatcttatgctgga |
289 |
Q |
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| T |
32600933 |
ttttcttcattttcttatattatgaccaactaactttattccatcccttagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctgga |
32600834 |
T |
|
| Q |
290 |
cctggaggatggaatggtaattagttaaccttactagaaatgttatgcatattaaaattgatatccttacatttatagcaaaatctagtattaggttctt |
389 |
Q |
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||||||||||||||||||||||| ||||||| ||||| |||||||||||| ||||| || | ||| ||||| || | |||| || | ||||| | || |
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| T |
32600833 |
cctggaggatggaatggtaattaattaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtacatcaaactccaatattaattcctc |
32600734 |
T |
|
| Q |
390 |
atatgtgtaattgttatttggatattagatcctgatatgcttgaagttggaaat |
443 |
Q |
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| T |
32600733 |
gtatgtgtcattaatgtttggatattagatcctgatatgcttgaagttggaaat |
32600680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 193 - 443
Target Start/End: Complemental strand, 32590483 - 32590232
Alignment:
| Q |
193 |
ttttcttcattttc-tatgttgtgatcaactgactttattctacctcagcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacc |
291 |
Q |
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| T |
32590483 |
ttttcttcattttcctatattatgaccaactaactttattcctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacc |
32590384 |
T |
|
| Q |
292 |
tggaggatggaatggtaattagttaaccttactagaaatgttatgcatattaaaattgatatccttacatttatagcaaaatctagtattaggttcttat |
391 |
Q |
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||||||||||||||||||||| ||||||| |||| ||| ||||| || |||| || | ||| ||||| || | |||| || | ||||| | || | |
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| T |
32590383 |
tggaggatggaatggtaattaattaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactccaatattaattcctcgt |
32590284 |
T |
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| Q |
392 |
atgtgtaattgttatttggatattagatcctgatatgcttgaagttggaaat |
443 |
Q |
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| T |
32590283 |
atgtgtcattaatgtttggatattagatcctgatatgcttgaagttggaaat |
32590232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 24883555 - 24883595
Alignment:
| Q |
269 |
aaatgggcatcttatgctggacctggaggatggaatggtaa |
309 |
Q |
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| T |
24883555 |
aaatgggcttcttacgctggacctggaggatggaatggtaa |
24883595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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