View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9681_low_11 (Length: 249)
Name: NF9681_low_11
Description: NF9681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9681_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 51415166 - 51415394
Alignment:
| Q |
1 |
tggaagtatactaccgacagnnnnnnngatagaaaacagaatcagaattgcatattacagccattgagcccaattaactggaataatgggtggtgcttaa |
100 |
Q |
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| T |
51415166 |
tggaagtatactaccgacagaaaaaaagatagaaaacagaatcagaattgcatattacagccattgaacccaattaactggaataatgggtggtgcttaa |
51415265 |
T |
|
| Q |
101 |
cacatagctactacttgagctttatgataagagacccataaaagtttactttttatgaaatcgggataatatgtgagnnnnnnnntacccttgtttgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
51415266 |
cacatagctactacttgagctttatgataagagacccataaaagtttactttttatgaaatcaggataataagtgag-aaaaaaatacccttgtttgctc |
51415364 |
T |
|
| Q |
201 |
gagtactttgaagagctttgaccagaatct |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
51415365 |
gagtactttgaagagctttgaccagaatct |
51415394 |
T |
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