View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9681_low_13 (Length: 224)

Name: NF9681_low_13
Description: NF9681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9681_low_13
NF9681_low_13
[»] chr7 (14 HSPs)
chr7 (15-203)||(22814668-22814856)
chr7 (59-197)||(22885310-22885448)
chr7 (75-203)||(22805019-22805147)
chr7 (59-203)||(22858144-22858288)
chr7 (75-203)||(22888993-22889121)
chr7 (75-203)||(22875623-22875751)
chr7 (74-203)||(22830731-22830860)
chr7 (74-203)||(22839752-22839881)
chr7 (15-203)||(22880233-22880420)
chr7 (59-203)||(22809326-22809470)
chr7 (75-203)||(22913375-22913503)
chr7 (16-203)||(22893595-22893782)
chr7 (54-148)||(22897952-22898046)
chr7 (19-197)||(22825903-22826081)
[»] chr1 (1 HSPs)
chr1 (60-202)||(21150886-21151028)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 22814668 - 22814856
Alignment:
Q  15 caaaggcaacccaacagttaaaaattttgacnnnnnnnnctcatcaaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccatta 114  Q
    ||||||||||||||||||||||||||| |||        |||| |||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  22814668 caaaggcaacccaacagttaaaaatttagacttttttacctcagcaaatactgttagcttaggaagttcagatatttcaaggttttgagcttggccatta 22814767  T
Q  115 accttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgagaatccaacatacattctattgttaagaat 203  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22814768 accttaaaactccacccaagaatataatgagaagctacaagtaaccctgttgaagatgagaatccaacatacattctattgttgagaat 22814856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 22885310 - 22885448
Alignment:
Q  59 caaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaa 158  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||| |||    
T  22885310 caaatattcttggctcaggaagttcagagatttcaaggttttgagcttggctattaaccttaaaactccaaccaagaatataatgagaagctacaattaa 22885409  T
Q  159 ccctgttgaagatgagaatccaacatacattctattgtt 197  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22885410 ccctgttgaagatgagaatccaacatacattctattgtt 22885448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 22805019 - 22805147
Alignment:
Q  75 aggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgag 174  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22805019 aggaaattgagagattacaaggttttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctgcaagtaaccctgttgaagatgag 22805118  T
Q  175 aatccaacatacattctattgttaagaat 203  Q
    |||||||||||||| ||||||||||||||    
T  22805119 aatccaacatacatactattgttaagaat 22805147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 22858144 - 22858288
Alignment:
Q  59 caaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaa 158  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||| ||     
T  22858144 caaatattcttagctcaggaagtttagagatttcaaggttttgagcttggccattaaccttaaaactccaaccaagaatataatgggaagctacaattac 22858243  T
Q  159 ccctgttgaagatgagaatccaacatacattctattgttaagaat 203  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||    
T  22858244 cccggttgaagatgagaatccaacatacattctattgttgagaat 22858288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 22888993 - 22889121
Alignment:
Q  75 aggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgag 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | | |||||||||||||||||||    
T  22888993 aggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaagaatatactgagaagctaccattaaccctgttgaagatgag 22889092  T
Q  175 aatccaacatacattctattgttaagaat 203  Q
    ||||||||||||||||||||||| |||||    
T  22889093 aatccaacatacattctattgttgagaat 22889121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 22875623 - 22875751
Alignment:
Q  75 aggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgag 174  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  || ||| |||||||||||||||    
T  22875623 aggaagttcagagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 22875722  T
Q  175 aatccaacatacattctattgttaagaat 203  Q
    ||||||||||||||||||||||| |||||    
T  22875723 aatccaacatacattctattgttgagaat 22875751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 22830731 - 22830860
Alignment:
Q  74 caggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatga 173  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||  ||||||||||||||||||||  |||||||||||||||||    
T  22830731 caggaaggtcagagatttcaaggttttgagattggccattaaccataaaactccaaccatgaatataatgagaagctgcaatgaaccctgttgaagatga 22830830  T
Q  174 gaatccaacatacattctattgttaagaat 203  Q
    |||||||||||||||||||||||| |||||    
T  22830831 gaatccaacatacattctattgttgagaat 22830860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 22839752 - 22839881
Alignment:
Q  74 caggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatga 173  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||  ||||||||||||||||||||  |||||||||||||||||    
T  22839752 caggaaggtcagagatttcaaggttttgagattggccattaaccataaaactccaaccatgaatataatgagaagctgcaatgaaccctgttgaagatga 22839851  T
Q  174 gaatccaacatacattctattgttaagaat 203  Q
    |||||||||||||||||||||||| |||||    
T  22839852 gaatccaacatacattctattgttgagaat 22839881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 22880233 - 22880420
Alignment:
Q  15 caaaggcaacccaacagttaaaaattttgacnnnnnnnnctcatcaaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccatta 114  Q
    |||||| ||||||||||||||||||||||||         ||| |||||| | || ||||| |||| |||||||||||||||||||||||||||||||||    
T  22880233 caaaggtaacccaacagttaaaaattttgactttttttg-tcagcaaatactattggctcatgaagctcagagatttcaaggttttgagcttgaccatta 22880331  T
Q  115 accttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgagaatccaacatacattctattgttaagaat 203  Q
    ||||||||||||||||||| || |||||||||||||  || ||||| |||||||||||| |||||||||||||| |||||||| |||||    
T  22880332 accttaaaactccaaccaagaacataatgagaagctaaaattaaccttgttgaagatgataatccaacatacatactattgttgagaat 22880420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 22809326 - 22809470
Alignment:
Q  59 caaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaa 158  Q
    ||||| || ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |  ||   |    
T  22809326 caaatgttcttagctcaggaagtttagagatatcaaggttttgagcttgaccattaaccttaaaactccaaccaagaacataatgagaagatagaataga 22809425  T
Q  159 ccctgttgaagatgagaatccaacatacattctattgttaagaat 203  Q
     ||||||||||||||||||||||||||||| ||| ||||||||||    
T  22809426 acctgttgaagatgagaatccaacatacatactagtgttaagaat 22809470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 22913375 - 22913503
Alignment:
Q  75 aggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgag 174  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |  || | | |||||||||||||||    
T  22913375 aggaagttcagagattacaagattttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagttagaattgaacctgttgaagatgag 22913474  T
Q  175 aatccaacatacattctattgttaagaat 203  Q
    |||||||||||||| ||| ||||||||||    
T  22913475 aatccaacatacatactagtgttaagaat 22913503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 22893595 - 22893782
Alignment:
Q  16 aaaggcaacccaacagttaaaaattttgacnnnnnnnnctcatcaaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccattaa 115  Q
    ||||||||||||||||||||||| |||||         |||| | |||| || || ||||||||||||||||||| ||||||||||||||||||||||||    
T  22893595 aaaggcaacccaacagttaaaaaatttgatttcgttttctcagctaatactggtaactcaggaagttcagagattacaaggttttgagcttgaccattaa 22893694  T
Q  116 ccttaaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgagaatccaacatacattctattgttaagaat 203  Q
     ||||||||||||||||| |||||||||||||| |  || | | || || |  ||||| |||||||||||||| ||||||||||||||    
T  22893695 tcttaaaactccaaccaagaatataatgagaagttagaaatgaaccagtagctgatgaaaatccaacatacatactattgttaagaat 22893782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 22897952 - 22898046
Alignment:
Q  54 ctcatcaaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaag 148  Q
    |||| ||||| ||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22897952 ctcaccaaatcttggtagcttaggaagttcagagattacaaggttttcagcttgaccattaaccttaaaactccaaccaagaatataatgagaag 22898046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 22825903 - 22826081
Alignment:
Q  19 ggcaacccaacagttaaaaattttgacnnnnnnnnctcatcaaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccattaacct 118  Q
    ||||||||||||||||||||||| |||        |||| ||||| ||  ||| | |||||||||||| ||| |||| ||||||||||||||||||| ||    
T  22825903 ggcaacccaacagttaaaaatttggactcttttttctcaccaaatcttcgtagtttaggaagttcagaaattacaagattttgagcttgaccattaagct 22826002  T
Q  119 taaaactccaaccaaaaatataatgagaagctgcaagtaaccctgttgaagatgagaatccaacatacattctattgtt 197  Q
    ||||||| ||||||| ||||||||||||||    || | | || || |  |||||||||||||||||||| ||||||||    
T  22826003 taaaacttcaaccaagaatataatgagaagtgaaaactgaaccagtagctgatgagaatccaacatacatactattgtt 22826081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 21151028 - 21150886
Alignment:
Q  60 aaatattgttagctcaggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaaaaatataatgagaagctgcaagtaac 159  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21151028 aaatactgttacttcaggaagttcagagatttcaaggttttgagccaggccattaaccttaaaactccaaccaagaatataatgagaagctgcaagtaac 21150929  T
Q  160 cctgttgaagatgagaatccaacatacattctattgttaagaa 202  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  21150928 cctgttgaagatgagaatccaacatacatactattgttgagaa 21150886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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