View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9681_low_14 (Length: 219)
Name: NF9681_low_14
Description: NF9681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9681_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 104982 - 104787
Alignment:
| Q |
1 |
agaagcaaaggtggaagaaaggtaatttactggctctataaaatccaaaattgtgattccattccaaatgcataatgtagnnnnnnnnnnnnnnnnnnnn |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
104982 |
agaaacaaaggtggaagaaaggtaatttactggctctataaaatccaaaattgtgattccattccaaatgcataatgtagtaatataatataatataata |
104883 |
T |
|
| Q |
101 |
nnnntggactatagaaaaagtaagctgtggtcttcttgttacattatatgtatgctcattcatgttagtgttatgcaaaaatagaagcatcatcaac |
197 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
104882 |
taattggactatagaaaaagtaagctgtggt-ttcttgttacattatatgtatgctcattcatgttagtgttatgcaaaaatagaagcatcatcaac |
104787 |
T |
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