View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9681_low_15 (Length: 214)
Name: NF9681_low_15
Description: NF9681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9681_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 4570275 - 4570439
Alignment:
| Q |
29 |
ttacaagagttatatatagtattaattgttaagcacaagaaactatactatagttttaaaaaacaaaggttaattttgcattggcattgaaacactattc |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4570275 |
ttacaagagttatatatagtagtaattgttaagcacaagaaactatactatagttttaaaaaacaaaggttaattttgcattggcattgaaacactattc |
4570374 |
T |
|
| Q |
129 |
aaagaatataaacagtatataaatattgaatagaataagattcacattgataagatacttactgc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4570375 |
aaagaatataaacagtatataaatattgaatagaataagattcacattgataagatacttactgc |
4570439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University