View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9681_low_4 (Length: 465)
Name: NF9681_low_4
Description: NF9681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9681_low_4 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 465
Target Start/End: Complemental strand, 8789819 - 8789368
Alignment:
| Q |
14 |
agaaaaacattgcttttgcaagagactgatttgatgactcaacctaatacctcctactcacaaaacaagaactctggcatgtcaacgccccctttcctat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789819 |
agaaaaacattgcttttgcaagagactgatttgatgactcaacctaatacctcctactcacaaaacaagaactctggcatgtcaacgccccctttcctat |
8789720 |
T |
|
| Q |
114 |
caaatcattgcttcagcaggcaaaatattcttcatacacattaaggatctaatacttgaaattatgtgaatgagaatctattgacttactttcatatagn |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789719 |
caaatcattgcttcagcaggcaaaatattcttcatacacattaaggatctaatactcgaaattatgtgaatgagaatctattgacttactttcatataga |
8789620 |
T |
|
| Q |
214 |
nnnnnnntccacgcaagagaaacaaaatcctacgcttattcttggactcctcagcaatagctttggttagatctgcacaattatgaaacaaatatttgtt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789619 |
aaaaaaatccacgcaagagaaacaaaatcctacgcttattcttggactcctcagcaatagctttggttagatctgcacaattatgaaacaaatatttgtt |
8789520 |
T |
|
| Q |
314 |
agaggcctgaaatcagattgagaatagaaagagttgaacgataataagaatagaagttgaaaatccaatagaagctaccaaaatacttgcacaaacaggc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8789519 |
agaggcctgaaatcagattgagaatagaaagagttgaacgataataagaatagaagttgaaaatccaatagaagctaccaaaatacttgcacaaacagac |
8789420 |
T |
|
| Q |
414 |
cacaaattagaatatagacagaaattatgttctttcagaataatctacccac |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
8789419 |
cacaaattagaatatagacagaaattatgttctttcagcaaaatctaaccac |
8789368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 28 - 450
Target Start/End: Complemental strand, 8783754 - 8783328
Alignment:
| Q |
28 |
tttgcaagagactgatttgatgactcaacctaatacctcctactcacaaaacaagaactctggcatgtcaacgccccctttcctatcaaatcattgcttc |
127 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8783754 |
tttgcaagagactgatttgatgattcaacctaaaacctcctactcacaaaacaagaactctggcatgtcaacgccccctttcctatcaaatcattgcttc |
8783655 |
T |
|
| Q |
128 |
agcaggcaaaatattcttcatacacattaaggatctaatacttgaaattatgtgaatgagaatctattgacttactttcatatagnnnnnnnntccacgc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
8783654 |
agcaggcaaaatattcttcatacacattaaggatctaatgctcaaaattatgtgaacgagaatccattgacttactttcagatagaaaaaaaaaccacgc |
8783555 |
T |
|
| Q |
228 |
aagagaaacaaaatcctacgcttattcttggactcctcagcaatagctttggttagatctgcacaat----tatgaaacaaatatttgttagaggcctga |
323 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||||||||| |||||||| | |
|
|
| T |
8783554 |
aagagaaacaaaaccctgcgcttattcttgggctccttagcaatagctttggatagatctgcacaattacatacaaaacaaatatttgatagaggccagt |
8783455 |
T |
|
| Q |
324 |
aatcagattgagaatagaaagagttgaacgataataagaatagaagttgaaaatccaatagaagctaccaaaatacttgcacaaacaggccacaaattag |
423 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
8783454 |
aatcagattgagcatagaaagagttgagcaataatgagaatagaagttgaaaatccaatagaagataccaaaaaacttgcacaaactaaccacaaattat |
8783355 |
T |
|
| Q |
424 |
aatatagacagaaattatgttctttca |
450 |
Q |
| |
|
||||||||||||||| | ||||||||| |
|
|
| T |
8783354 |
aatatagacagaaatgacgttctttca |
8783328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 281 - 446
Target Start/End: Complemental strand, 8777454 - 8777283
Alignment:
| Q |
281 |
tagatctgcacaattatgaaacaaatatttgttagaggcctgaaatcagattgagaatagaaagagttgaacgataataagaatagaagttgaaaatcca |
380 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
8777454 |
tagatctgcacaattacgaaacaaatatttgatagaggcctgaaatcagattgagcatcgaaagagttgagctataataagaatagaagttgaaaatcca |
8777355 |
T |
|
| Q |
381 |
a------tagaagctaccaaaatacttgcacaaacaggccacaaattagaatatagacagaaattatgttct |
446 |
Q |
| |
|
| || |||||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
8777354 |
aaagaagtataagctaccaaaaagcttgcacaaaccaaccacacattagaatatagactgaaatgatgttct |
8777283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 8789948 - 8789906
Alignment:
| Q |
27 |
ttttgcaagagactgatttgatgactcaacctaatacctccta |
69 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
8789948 |
ttttgcaagagactgacttgatgactgaacctgatacctccta |
8789906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 2540417 - 2540479
Alignment:
| Q |
281 |
tagatctgcacaattatgaaacaaatatttgttagaggcctgaaatcagattgagaatagaaa |
343 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
2540417 |
tagatctgcataattatgaaacaaatatttgatagaggccggaaatcagattgagcatagaaa |
2540479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 2540491 - 2540537
Alignment:
| Q |
414 |
cacaaattagaatatagacagaaattatgttctttcagaataatcta |
460 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| | |||||| |
|
|
| T |
2540491 |
cacaaattagaatatagactgaaatgatgttctttcagcaaaatcta |
2540537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University