View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9681_low_7 (Length: 309)
Name: NF9681_low_7
Description: NF9681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9681_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 116 - 291
Target Start/End: Original strand, 31950742 - 31950917
Alignment:
| Q |
116 |
attcaagttagaattatgtacataccctcaactacgacaaaaactatcccagaacaaccacatgtcggatcaaaggctacccctgctacaccacaacact |
215 |
Q |
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| T |
31950742 |
attcaagttagaattatgtacataccctcaactacgacaaaaactatcacagaacaaccacatgtcggatcaaaggctacccctactacaccacaacact |
31950841 |
T |
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| Q |
216 |
tggtagtgagtgcagcttcaaaactcacatatactgaataaaaaggcagctaaaggagcaaaactactccagttgg |
291 |
Q |
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| T |
31950842 |
tggtagtgagtgcagcttcaaaactcacatatactgaacaaaaaggcagctaaaggagcaaaaccactccagttgg |
31950917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 291
Target Start/End: Complemental strand, 31951838 - 31951683
Alignment:
| Q |
136 |
cataccctcaactacgacaaaaactatcccagaacaaccacatgtcggatcaaaggctacccctgctacaccacaacacttggtagtgagtgcagcttca |
235 |
Q |
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| T |
31951838 |
cataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttca |
31951739 |
T |
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| Q |
236 |
aaactcacatatactgaataaaaaggcagctaaaggagcaaaactactccagttgg |
291 |
Q |
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| T |
31951738 |
gaactcacatatgctgaacaaaatggcagctaaaggagcaaaaccactctagttgg |
31951683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 31950638 - 31950671
Alignment:
| Q |
11 |
cacagatcttagtgtcgttcaattggaatcagtt |
44 |
Q |
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| T |
31950638 |
cacagatcttagtgtcgttcaattggaatcagtt |
31950671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 3498224 - 3498361
Alignment:
| Q |
116 |
attcaagttagaattatgtacataccctcaactacgacaaaaactatcccagaacaaccacatgtcggatcaaaggctacccctgctacaccacaacact |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | ||||| |||||| ||||| || |||||||||||||||||||||||||||||||||| |
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| T |
3498224 |
attcaagttagaattatgtacataccctcaactacaacagcagctatcacagaaccaccacgcgttggatcaaaggctacccctgctacaccacaacact |
3498323 |
T |
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| Q |
216 |
tggtagtgagtgcagcttcaaaactcacatatactgaa |
253 |
Q |
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| T |
3498324 |
gggtagagggtgcagcttcagaactcacatatgctgaa |
3498361 |
T |
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