View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_10 (Length: 436)
Name: NF9682_low_10
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 35044503 - 35044091
Alignment:
| Q |
18 |
aagagctccctaaacgcttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaaccaccgttctaaacatcacgtttatcgctatat |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044503 |
aagagctctctaaacgcttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaaccaccgttctaaacatcacgtttatcgctatat |
35044404 |
T |
|
| Q |
118 |
caccaaaccatttcttcatttctgttaacaccttttcagaagagtgactatctttcatcgcattcttaacctcagtttccataacatgtttaagcatatc |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044403 |
caccaaaccatttcttcatttctgttaccaccttttcagaagagtgactatctttcatcgcattcttaacctcagtttccataacatgtttaagcatatc |
35044304 |
T |
|
| Q |
218 |
tattcgtgtggcggagaggacgtggatggtggatatcttacgcactgtgcgccaataggaaccataaggactgaaacctatcatggaaaagttatatccc |
317 |
Q |
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| T |
35044303 |
tatccgtgtggcggagaggacgtggatggtggatatcttacgcactgtgcgccaataggaaccgtaaggactgaaacctatcatggaaaagttatatccc |
35044204 |
T |
|
| Q |
318 |
aaaatttcaaaggctatagatttcggacgagaagcaaaggctctatcgtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttt |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044203 |
aaaatttcaaaggctatagatttgggacgagaagcaaaggctctatcgtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttt |
35044104 |
T |
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| Q |
418 |
tgtgaacaccaaa |
430 |
Q |
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||||||||||||| |
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| T |
35044103 |
tgtgaacaccaaa |
35044091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 186 - 427
Target Start/End: Complemental strand, 35030067 - 35029826
Alignment:
| Q |
186 |
acctcagtttccataacatgtttaagcatatctattcgtgtggcggagaggacgtggatggtggatatcttacgcactgtgcgccaataggaaccataag |
285 |
Q |
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||||||| |||||| |||||||||||||||||||| ||| || |||||||| |||| ||||| || ||||||||||| |||||||| |||||||||| |
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| T |
35030067 |
acctcagattccattacatgtttaagcatatctatccgttgagctgagaggacatggacggtggcgattttacgcactgtacgccaataagaaccataag |
35029968 |
T |
|
| Q |
286 |
gactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttcggacgagaagcaaaggctctatcgtttacggtgaagcattgttt |
385 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||| | | | || ||||||||||| |||||||| |
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| T |
35029967 |
gactgaaacctatcatggaaaagttataccctaaaatttcaaaggctgcagatttcggacgtgaagcaaaagttttgtcatttacggtgaaacattgttt |
35029868 |
T |
|
| Q |
386 |
cgccatttcacaactgcttataactagtgttttgtgaacacc |
427 |
Q |
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| T |
35029867 |
caccatttcataactgcttacaactaaggttttgtgaacacc |
35029826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 159 - 403
Target Start/End: Complemental strand, 35036201 - 35035957
Alignment:
| Q |
159 |
gagtgactatctttcatcgcattcttaacctcagtttccataacatgtttaagcatatctattcgtgtggcggagaggacgtggatggtggatatcttac |
258 |
Q |
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|||| |||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||| |
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| T |
35036201 |
gagtaactatctttcatagctttcttcacctcagattccataacatgtttaagcatatctattcgttgagctgagaggacgtggacagtggcgatcttac |
35036102 |
T |
|
| Q |
259 |
gcactgtgcgccaataggaaccataaggactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttcggacgagaagcaaaggc |
358 |
Q |
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||| ||| |||||||| ||||| || ||||| | ||| | ||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
35036101 |
gcaatgtacgccaataagaaccgtagggactcataccaaacatggaagagttataacccatgatttcaaaggctatagatttgggacgagaagcaaaggc |
35036002 |
T |
|
| Q |
359 |
tctatcgtttacggtgaagcattgtttcgccatttcacaactgct |
403 |
Q |
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| | |||||||| ||||| || ||| | || ||||| |||||||| |
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| T |
35036001 |
tttgtcgtttacagtgaaacactgtctagcaatttcccaactgct |
35035957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 186 - 427
Target Start/End: Complemental strand, 35019975 - 35019734
Alignment:
| Q |
186 |
acctcagtttccataacatgtttaagcatatctattcgtgtggcggagaggacgtggatggtggatatcttacgcactgtgcgccaataggaaccataag |
285 |
Q |
| |
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||||||| |||||| |||||||||||||||||||| ||| || |||||||| || | |||| || |||||||| || |||||||| |||||||||| |
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| T |
35019975 |
acctcagattccattacatgtttaagcatatctatccgttgagctgagaggacatgaacagtggcaattttacgcacggtacgccaataagaaccataag |
35019876 |
T |
|
| Q |
286 |
gactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttcggacgagaagcaaaggctctatcgtttacggtgaagcattgttt |
385 |
Q |
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|||| ||||| | ||||||| ||||||| |||| |||||||||||||||||||| ||||| |||||||| | | | ||||||||||| || || ||||| |
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| T |
35019875 |
gactcaaaccaaacatggaagagttataacccatgatttcaaaggctatagatttaggacgtgaagcaaaagttttgtcgtttacggtaaaacactgttt |
35019776 |
T |
|
| Q |
386 |
cgccatttcacaactgcttataactagtgttttgtgaacacc |
427 |
Q |
| |
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| |||||||| ||||||||| |||| |||||||||||||| |
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| T |
35019775 |
caccatttcataactgcttactactaaggttttgtgaacacc |
35019734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 35036303 - 35036251
Alignment:
| Q |
87 |
accgttctaaacatcacgtttatcgctatatcaccaaaccatttcttcatttc |
139 |
Q |
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||||||||| |||| ||||| ||||||||||||||||||||||| |||||||| |
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| T |
35036303 |
accgttctacacataacgttcatcgctatatcaccaaaccattttttcatttc |
35036251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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