View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_15 (Length: 344)
Name: NF9682_low_15
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 24620454 - 24620117
Alignment:
| Q |
1 |
atgctagaacataagatgacctctgaagctctcaagaatcagttatcagaagttatgaaggaacataagagacagagtgaaattcaagaggaattgataa |
100 |
Q |
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| T |
24620454 |
atgctagaacataagatgacctctgaagctcacaagaatcagttatcagaagttatgaaggaacataagagacagagtgaaattcaagaggaattgataa |
24620355 |
T |
|
| Q |
101 |
ggaagcaagaagagatggcaaagaaacagtaagagactaatgtcgggatagcggctcttctggacatgatgaagaag-aaacatcaaccttagaacctta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24620354 |
ggaagcaagaagagatggcaaagaaacagtaagagactaatgtcgggatagcggctcttctggacatgatgaagaagaaaacatcaaccttagaacctta |
24620255 |
T |
|
| Q |
200 |
gttgcacaaccttcattttagcttatcatgttttatctttgcttctgaatatttgtgcttctgatatattgttgtctttgatacaattttctttaactct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620254 |
gttgcacaaccttcattttagcttatcatgttttatctttgcttctgaatatttgtgcttctgatatattgttgtctttgatacaattttctttaactct |
24620155 |
T |
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| Q |
300 |
gatgctttatctgtttcatatatattttgcggtctctg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24620154 |
gatgctttatctgtttcatatatattttgcggtctctg |
24620117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 24497269 - 24497321
Alignment:
| Q |
166 |
atgatgaagaagaaacatcaaccttagaaccttagttgcacaaccttcatttt |
218 |
Q |
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||||||||||| |||| |||||||||| ||||||||||||| |||| ||||| |
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| T |
24497269 |
atgatgaagaaacaacaacaaccttagacccttagttgcacacccttgatttt |
24497321 |
T |
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