View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9682_low_17 (Length: 334)

Name: NF9682_low_17
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9682_low_17
NF9682_low_17
[»] chr4 (6 HSPs)
chr4 (1-326)||(48957989-48958314)
chr4 (96-316)||(48912364-48912584)
chr4 (1-310)||(48965174-48965483)
chr4 (84-314)||(48961219-48961451)
chr4 (100-300)||(48974062-48974262)
chr4 (98-254)||(48951185-48951341)
[»] chr8 (1 HSPs)
chr8 (1-310)||(12641506-12641815)
[»] scaffold0536 (3 HSPs)
scaffold0536 (3-316)||(6530-6843)
scaffold0536 (87-314)||(10514-10741)
scaffold0536 (98-247)||(1541-1690)
[»] chr2 (3 HSPs)
chr2 (1-311)||(13448208-13448518)
chr2 (1-304)||(13454679-13454982)
chr2 (12-304)||(13440056-13440348)
[»] chr6 (2 HSPs)
chr6 (88-315)||(12590192-12590419)
chr6 (15-304)||(12483498-12483784)
[»] chr7 (1 HSPs)
chr7 (1-310)||(3417552-3417861)
[»] chr5 (2 HSPs)
chr5 (5-304)||(12540534-12540833)
chr5 (1-310)||(28385179-28385488)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 48957989 - 48958314
Alignment:
Q  1 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48957989 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 48958088  T
Q  101 accgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 200  Q
    ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48958089 accaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 48958188  T
Q  201 acagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48958189 acagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 48958288  T
Q  301 aacctttcttctttcctatgcttctc 326  Q
    |||||||||||||||| ||| |||||    
T  48958289 aacctttcttctttccaatgtttctc 48958314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 96 - 316
Target Start/End: Complemental strand, 48912584 - 48912364
Alignment:
Q  96 gttgcaccgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccg 195  Q
    |||||||||||||||||||| || ||  |||| |  |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| |    
T  48912584 gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctg 48912485  T
Q  196 cgctaacagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaat 295  Q
    | ||||| ||||| ||| |||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| ||||| ||| ||||    
T  48912484 cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat 48912385  T
Q  296 gatcaaacctttcttctttcc 316  Q
     |||| | | |||||||||||    
T  48912384 aatcatagccttcttctttcc 48912364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 48965174 - 48965483
Alignment:
Q  1 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 100  Q
    ||||||||| ||||||||||||| |||||||||| ||||| |||||  ||||||| | ||||| | | || ||||||||  | | |||||| ||||||||    
T  48965174 catcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgc 48965273  T
Q  101 accgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 200  Q
    ||| || ||||| || || |||||||| || |||||||  || || ||||||||||||||||||||    ||||| || ||||| ||||||||||| | |    
T  48965274 accaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcacca 48965373  T
Q  201 acagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 300  Q
    |||||||||||  |||||||||| || ||||| |||||||| |||||||| ||   |||||||||||||| ||| || || ||||| |||||||| ||||    
T  48965374 acagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatca 48965473  T
Q  301 aacctttctt 310  Q
    |||| |||||    
T  48965474 aacccttctt 48965483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 84 - 314
Target Start/End: Original strand, 48961219 - 48961451
Alignment:
Q  84 acacaccactctgttgcaccgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatca 183  Q
    |||||||| ||||||||||| || || |  || || || ||||||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||    
T  48961219 acacaccattctgttgcaccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatca 48961318  T
Q  184 ttggaacccccgcgctaacagcctccacaatg--gagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggg 281  Q
    |||| | ||| || ||| ||||||| |   ||  ||||||||||||||||| ||||||||  ||||||| ||  |||||| ||| |||| ||||||||||    
T  48961319 ttgggatccctgcactaccagcctcaatggtggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggg 48961418  T
Q  282 gcccaccccctaatgatcaaacctttcttcttt 314  Q
    ||||||||| ||||||||||||| |||||||||    
T  48961419 gcccaccccttaatgatcaaacccttcttcttt 48961451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 300
Target Start/End: Original strand, 48974062 - 48974262
Alignment:
Q  100 caccgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgct 199  Q
    |||| |||||||| || || || ||||| | ||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||||||||||| || ||    
T  48974062 caccaacctccacaccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcact 48974161  T
Q  200 aacagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatc 299  Q
    ||| || |||||  ||||||||||||||||||||||||  |||||||| |  |||  |||||  | |||||  |||||||||||||||||||| ||||||    
T  48974162 aacggcttccacggtggagttccacccgcaatgtgtcaagaatgcaccgatagcagggtggcctaaaatcaccacttgtggggcccacccccttatgatc 48974261  T
Q  300 a 300  Q
    |    
T  48974262 a 48974262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 48951185 - 48951341
Alignment:
Q  98 tgcaccgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcg 197  Q
    |||||| || ||||| || || || ||||||| |||||| | ||||||||||||||| || || | ||||||||||||||||||||| ||||||||  |     
T  48951185 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 48951284  T
Q  198 ctaacagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggca 254  Q
    |||| |||||||   |  ||||||||||| |||||||||| ||| || || ||||||    
T  48951285 ctaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgcgccaacggca 48951341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 12641815 - 12641506
Alignment:
Q  1 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 100  Q
    |||||||| |||||||||||||| ||||||| || |||||||||| | ||||||| |  |||| |||  | | | |||| | |||| |||||||||||||    
T  12641815 catcaccatcgtccatcaatctcctcacagctttctctatactatgtctactcaccactttctcttttcctttataaccatgtacagaccactctgttgc 12641716  T
Q  101 accgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 200  Q
    ||| ||||||||||| || | ||||||| ||||||||| ||||||||| ||||| |||||||| ||||| ||||||||||||||||||| ||| || |||    
T  12641715 acccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcacta 12641616  T
Q  201 acagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 300  Q
    |||||||| || | ||||||| |||||||||| ||||| ||||||||||| |||  |||||| | |||||  ||||||||||||||| |||||||||| |    
T  12641615 acagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataa 12641516  T
Q  301 aacctttctt 310  Q
    ||||||||||    
T  12641515 aacctttctt 12641506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 6843 - 6530
Alignment:
Q  3 tcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcac 102  Q
    |||||||| |||||||||||| |||||||||| || ||||||||  | | ||| | ||||| | ||||| ||| |||  ||  || |||||| | ||| |    
T  6843 tcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgccc 6744  T
Q  103 cgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaac 202  Q
    | ||| ||||||| |||| |||||| |  ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||    
T  6743 ccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaac 6644  T
Q  203 agcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaa 302  Q
    |||||| ||| |||| |||||||| ||||| |||||||| |||||||  ||  ||||||||| ||||| ||||||||| ||||| |||||||| ||||||    
T  6643 agcctcaacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaa 6544  T
Q  303 cctttcttctttcc 316  Q
    || |||||||||||    
T  6543 cccttcttctttcc 6530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 87 - 314
Target Start/End: Complemental strand, 10741 - 10514
Alignment:
Q  87 caccactctgttgcaccgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattg 186  Q
    |||||||||  |||||| || ||| |||| || || ||||| |  |||||||||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  10741 caccactctactgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattg 10642  T
Q  187 gaacccccgcgctaacagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggccca 286  Q
    ||||||| || ||||| ||||||||  |||| |||||||| |||||||||||||| ||||||||  || ||||||| ||||||| ||| || ||||||||    
T  10641 gaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggccca 10542  T
Q  287 ccccctaatgatcaaacctttcttcttt 314  Q
     ||| |||| |||||||| |||||||||    
T  10541 acccttaataatcaaacccttcttcttt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 1690 - 1541
Alignment:
Q  98 tgcaccgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcg 197  Q
    ||||||||| ||||| || || ||  |||| | |||||||||| | || || |||||||| || | ||| || ||||| |||||||||||||  || ||     
T  1690 tgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgca 1591  T
Q  198 ctaacagcctccacaatggagttccacccgcaatgtgtcataaatgcacc 247  Q
    |||||||||||    || ||||||||||| |||||||||| |||||||||    
T  1590 ctaacagcctcggttatagagttccacccacaatgtgtcaaaaatgcacc 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 13448208 - 13448518
Alignment:
Q  1 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 100  Q
    ||||||||||||||||||||||| | |||||||| ||||| |||||| | ||||| | ||||| | ||||| | | |||  |   |||||| ||||||||    
T  13448208 catcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgc 13448307  T
Q  101 accgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 200  Q
    |||||| || || || |||||||| |  |  |||||||  ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||    
T  13448308 accgacttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcacta 13448407  T
Q  201 acagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 300  Q
    |||||||| ||  | ||||||| ||||||||| ||||||||| | ||||| |||  ||||||||  |||  ||| ||||||||||| |||||||||||||    
T  13448408 acagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatca 13448507  T
Q  301 aacctttcttc 311  Q
    |||| ||||||    
T  13448508 aacccttcttc 13448518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 13454679 - 13454982
Alignment:
Q  1 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 100  Q
    ||||||||||| ||||||||||| |||||||||| ||||| |||||||| ||||| | ||||| | ||||| ||| |||  ||  |||||| ||||||||    
T  13454679 catcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgc 13454778  T
Q  101 accgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 200  Q
    |||||| || |  || |||||||| || |  ||||| |  ||||| ||||||||||| |||||||| || |||||||| ||||||||||| |||  ||||    
T  13454779 accgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgcta 13454878  T
Q  201 acagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 300  Q
    |||||||| || || ||||||| ||||||||| ||||||||| | ||||| |||  ||| ||||  |||  ||||||||||||||| |||||||||||||    
T  13454879 acagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatca 13454978  T
Q  301 aacc 304  Q
    ||||    
T  13454979 aacc 13454982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 13440056 - 13440348
Alignment:
Q  12 tccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcaccgacctcca 111  Q
    |||||||||||| |||||||||| |||||  ||||  | ||||| | ||||| | ||||| ||| ||| ||   |||||| || ||||||||||| ||||    
T  13440056 tccatcaatctcctcacagccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttcca 13440155  T
Q  112 ccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccac 211  Q
    | || |||||||| |  |  |||| ||  ||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||| ||| ||    
T  13440156 ctccaattcctcgaaattgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctac 13440255  T
Q  212 aatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacc 304  Q
    ||| ||||||| ||||||||| ||||||||| | ||||| |||  ||||||||  |||  ||||||||||||||| ||| |||||||||||||    
T  13440256 aattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacc 13440348  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 315
Target Start/End: Complemental strand, 12590419 - 12590192
Alignment:
Q  88 accactctgttgcaccgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattgg 187  Q
    |||| ||||||||||| || ||||| || |||||  |||||||||||||||||||||||||||| || ||||| |||| ||  ||||| |||||||| ||    
T  12590419 accaatctgttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcgg 12590320  T
Q  188 aacccccgcgctaacagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccac 287  Q
    ||  || || ||||| |||||||| | ||| ||||| || |||||||||||||| || ||||| ||| ||||||||| |||||  ||||||||||||||     
T  12590319 aattccagcactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaa 12590220  T
Q  288 cccctaatgatcaaacctttcttctttc 315  Q
    ||||||||||||||||| ||||||||||    
T  12590219 cccctaatgatcaaacccttcttctttc 12590192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 12483784 - 12483498
Alignment:
Q  15 atcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcaccgacctccaccc 114  Q
    ||||||||  ||||||||||||||||  | ||| ||||||||| |||   ||||| | ||||| | |  | ||||||||||||||||||||| ||||| |    
T  12483784 atcaatcttctcacagccttttctatgttgtctctactcacaacctt---tttcttcccaaaatcatacaaacaccactctgttgcaccgacttccacac 12483688  T
Q  115 cgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacaat 214  Q
    | || |||||||||| |||||| |  ||||||||||| || ||||| || || |||||||||||||||||||||| ||| || ||||| || |||||||     
T  12483687 caatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaac 12483588  T
Q  215 ggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacc 304  Q
     || ||||| || || || ||||||||||||||||| |||  |||||||| |||||  || ||||| ||||||||||| ||||| |||||    
T  12483587 agaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacc 12483498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 3417861 - 3417552
Alignment:
Q  1 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 100  Q
    |||||| || ||||||||||||| |||  ||||| |||||   |||| | ||||| | ||||| | ||||| ||| ||| | | ||| ||| ||||||||    
T  3417861 catcactactgtccatcaatctcctcattgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgc 3417762  T
Q  101 accgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 200  Q
    ||| || ||||| || |||||||| || |  ||||| |  ||||||||| | ||||| ||||||||  |||||||||| ||||||||||| || || | |    
T  3417761 acctacttccactccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcacca 3417662  T
Q  201 acagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 300  Q
    |||||||| ||||  ||||||| ||| ||||||||||||||| | || || |||  ||||||||  |||  ||| ||||||||||| ||||||| |||||    
T  3417661 acagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatca 3417562  T
Q  301 aacctttctt 310  Q
    |||| |||||    
T  3417561 aacccttctt 3417552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 304
Target Start/End: Original strand, 12540534 - 12540833
Alignment:
Q  5 accaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcaccg 104  Q
    |||||| |||||||||||| ||| |||||| ||||| | |||| | |  || | ||||| | ||||| ||  ||| |||  |||||| |||||||||||     
T  12540534 accaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacct 12540633  T
Q  105 acctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacag 204  Q
    || || || || |||||||| || |  ||||| |  ||||| ||| | || || ||||||||   ||||||||| ||||||||||| ||||| | |||||    
T  12540634 acttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacag 12540733  T
Q  205 cctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacc 304  Q
    |||| ||||| ||||| | ||| ||||||||||||||| | ||||| |||  ||||||||  |||  ||| ||||||||||| |||||||||||||||||    
T  12540734 cctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacc 12540833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 28385179 - 28385488
Alignment:
Q  1 catcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgc 100  Q
    |||| ||||||||||||||| || ||| |||||| |||||  ||||| | ||||| | ||||| | ||||| ||  ||| |||  |||||| || ||| |    
T  28385179 catcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttac 28385278  T
Q  101 accgacctccaccccgattcctcgcacatcagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgcta 200  Q
    ||| || ||||| || |||| ||| ||    |||||||| |||||||||  ||| || ||| ||||    |||||||| ||||||||||| ||||||| |    
T  28385279 acctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgcca 28385378  T
Q  201 acagcctccacaatggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatca 300  Q
    |||||||| ||||| |||||||  ||||||||||||| |||| | ||||| |||  || |||||  |||| ||||||||||||||| ||||| || || |    
T  28385379 acagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatga 28385478  T
Q  301 aacctttctt 310  Q
    |||| |||||    
T  28385479 aacccttctt 28385488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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