View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_18 (Length: 318)
Name: NF9682_low_18
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 44736082 - 44736384
Alignment:
| Q |
1 |
agaggaaaaattggatgatttttccactagctggattttatgcattatataaaatatcttgcacaaatacttaggtgattatcagacatacactaatgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44736082 |
agaggaaaaattggatgatttttccactagctggattttatgcattatataaaatatcttgcacaaatacttaggtgattatcagacatgcactaatgag |
44736181 |
T |
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| Q |
101 |
aaaatacacatttgtaaactggcattcaaaaaagtagtatctcagagaaaatcttaacaaataacatctttgatttcaaaattcaaacttcaatatagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
44736182 |
aaaatacacatttgtaaactggcattcaaaaaagtagtatctcagagaaaatcttaacaaataacatccttgatttcaaaactcaaacttcaatatagaa |
44736281 |
T |
|
| Q |
201 |
gtttcaaaatactagtgaacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataacgacatgtaccagttatctctctcaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44736282 |
gtttcaaaatactagtgaacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataacgacatgtaccagttatctctctcaatg |
44736381 |
T |
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| Q |
301 |
atg |
303 |
Q |
| |
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||| |
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| T |
44736382 |
atg |
44736384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 18315549 - 18315492
Alignment:
| Q |
218 |
aacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataacga |
275 |
Q |
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| T |
18315549 |
aacaaggcatctttgacgcgagaagagttccctttctctgtcactgaaacaataacga |
18315492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 1545533 - 1545591
Alignment:
| Q |
214 |
agtgaacaaggcatttgtgacgcgacaagagttccctctctctgtcactaaaatgataa |
272 |
Q |
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| T |
1545533 |
agtgaacagggcaattttgacgagagaagagttccctctcagtgtcactaaaatgataa |
1545591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 45245482 - 45245384
Alignment:
| Q |
156 |
aacaaataacatctttgatttcaaaattcaaacttcaatatagaagtttcaaaatactagtgaacaaggcatttgtgacgcgacaagagttccctctct |
254 |
Q |
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|||||| |||||||| | |||||| ||||||||| | || || ||||||| ||| |||| |||||||||| ||||||||||||||||||| |||| |
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| T |
45245482 |
aacaaaaaacatcttacacttcaaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttgacgcgacaagagttcccgctct |
45245384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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