View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_2 (Length: 656)
Name: NF9682_low_2
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_2 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 41963795 - 41963328
Alignment:
| Q |
18 |
aagataaaccaatacagaagccaaaccaacaacaatattatacctaatagaccaagtcaacaatttccctctctcaggttctttgtaaagcatcttgtct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963795 |
aagataaaccaatacagaagccaaaccaacaacaatattatacctaatagaccaagtcaacaatttccctctctcaggttctttgtaaagcatcttgtct |
41963696 |
T |
|
| Q |
118 |
aagcttccattaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaa |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963695 |
aagcttccattaggcatgaaatcataaaaaagaagcaactcacctttctcaacagaccaacccaacaactgagccaaattcttgtgccttaaaccagcaa |
41963596 |
T |
|
| Q |
218 |
tgatgttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttata |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963595 |
tgatgttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttata |
41963496 |
T |
|
| Q |
318 |
cacagttccaaacgaaccgtgaccaacaatcctgctcggatgaaactctcttgtagccgatttcaattctctgtaactaaactccctaggacaagcaaca |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963495 |
cacagttccaaatgaaccgtgaccaacaatcctgctcggatgaaactctcttgtagccgatttcaattctctgtaactaaactccctaggacaagcaaca |
41963396 |
T |
|
| Q |
418 |
aacccagtttgaaaattcttcgacaccccttttctcacacctttccatttcataaaagaataataccc |
485 |
Q |
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| T |
41963395 |
aacccagtttgaaaattcttcgacaccccttttctcacacctttccatttcataaaagaataataccc |
41963328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 547 - 643
Target Start/End: Complemental strand, 41963266 - 41963170
Alignment:
| Q |
547 |
tttttcttcgaagacgaagaaaaagaattcttcgaagaaaaagtagaacgtgacccacgaacttttacctcattcccggtacttacaccaacagaat |
643 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963266 |
tttttcttcgaagacgaagaaaaagaattcttcgaagaaaaagtagaacgcgacccacgaacttttacctcattcccggtacttacaccaacagaat |
41963170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 23 - 485
Target Start/End: Complemental strand, 1225246 - 1224784
Alignment:
| Q |
23 |
aaaccaatacagaagccaaaccaacaacaatattatacctaatagaccaagtcaacaatttccctctctcaggttctttgtaaagcatcttgtctaagct |
122 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225246 |
aaaccaatacagaagccaaaccaacaacaatattatacctaatagaccaagtcaacaatttccctctctcaggttctttgtaaagcatcttgtctaagct |
1225147 |
T |
|
| Q |
123 |
tccattaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1225146 |
tccattaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatg |
1225047 |
T |
|
| Q |
223 |
ttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttatacacag |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1225046 |
ttcaattcagagagaaactcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaatggttccagacgatataaagaacgctttatacaaag |
1224947 |
T |
|
| Q |
323 |
ttccaaacgaaccgtgaccaacaatcctgctcggatgaaactctcttgtagccgatttcaattctctgtaactaaactccctaggacaagcaacaaaccc |
422 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224946 |
ttccaaacgaaccgtgaccaacaatcctactcggatgaaactctcttgtagccgatttcaattctctgtaactaaactccctaggacaagcaacaaaccc |
1224847 |
T |
|
| Q |
423 |
agtttgaaaattcttcgacaccccttttctcacacctttccatttcataaaagaataataccc |
485 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224846 |
agtttgaaaattcttcgacaccccttttctcacacctttccatttcataaaagaataataccc |
1224784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 1224708 - 1224644
Alignment:
| Q |
579 |
cgaagaaaaagtagaacgtgacccacgaacttttacctcattcccggtacttacaccaacagaat |
643 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224708 |
cgaagaaaaagaagaacgcgacccacgaacttttacctcattcccggtacttacaccaacagaat |
1224644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 139 - 286
Target Start/End: Complemental strand, 23914950 - 23914803
Alignment:
| Q |
139 |
tcataaacaagaagcaactcacctttctcaacacaccaacccaacaactgagccaaattcttgtgccttaaaccagcaatgatgttcaattcagagagaa |
238 |
Q |
| |
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||||| ||||| | ||| ||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||| || || || || || | || |
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| T |
23914950 |
tcatacacaagtaacaattcacctttctcaacacaccaacctaaaagttgaaccaaattcttgtgccttaaaccagctataatcgataactcggataaaa |
23914851 |
T |
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| Q |
239 |
actcggtctttccttcatgtgaatgcctcgatcttttcactgcagcaa |
286 |
Q |
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||||||| ||||||||||||||||| || |||||||| || ||||||| |
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| T |
23914850 |
actcggtttttccttcatgtgaatgtcttgatcttttaacagcagcaa |
23914803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 22897509 - 22897561
Alignment:
| Q |
112 |
ttgtctaagcttccattaggcatgaaatcataaacaagaagcaactcaccttt |
164 |
Q |
| |
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||||||| ||||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
22897509 |
ttgtctagacttccattaggcatgtaatcatagaccagaagcaactcaccttt |
22897561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 37271 - 37234
Alignment:
| Q |
112 |
ttgtctaagcttccattaggcatgaaatcataaacaag |
149 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| |
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| T |
37271 |
ttgtctaagcttccatttggcatgaactcataaacaag |
37234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 28279122 - 28279062
Alignment:
| Q |
127 |
ttaggcatgaaatcataaacaagaagcaactcacctttctcaacacaccaacccaacaact |
187 |
Q |
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|||||||| || |||||||||||||| ||||||||||| ||| |||||||| ||||||| |
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| T |
28279122 |
ttaggcataaactcataaacaagaagaaactcacctttttcatggcaccaacctaacaact |
28279062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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