View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_20 (Length: 293)
Name: NF9682_low_20
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 30956952 - 30956687
Alignment:
| Q |
19 |
ttttgagccacttgtagacatcttgcaagaaactcgtctgttcattgaagtttaccactttgagtttacataattatatttttatttatgtctctcacaa |
118 |
Q |
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| T |
30956952 |
ttttgagccacttgtagacatcttgcaagaaactcgtctgttcattgaagtttaccactttgagtttacataattatatttttatttatgtctctcacaa |
30956853 |
T |
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| Q |
119 |
taaaagcaacaacttctgtcgactgtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaatttt |
218 |
Q |
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| T |
30956852 |
taaaagcaacaacttctgtcgactgtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaatttt |
30956753 |
T |
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| Q |
219 |
ggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtcc |
284 |
Q |
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| T |
30956752 |
ggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtcc |
30956687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 284
Target Start/End: Complemental strand, 30946724 - 30946451
Alignment:
| Q |
31 |
tgtagacatcttgcaagaaactcgtctgttcattgaagtttaccactttgagtttacataattat---atttttatttat-------gtctctcacaata |
120 |
Q |
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| T |
30946724 |
tgtagacatcttgcaagaaacttgtctattctttgaagtttaccactttgagtttacataattatataatttttatgtattatctacatctcttgcaata |
30946625 |
T |
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| Q |
121 |
aaagcaacaactt-------------ctgtcgactgtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagct |
207 |
Q |
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| T |
30946624 |
aaagcaacaacttttgatacagttgattgtcgaccgtatatgcttgtaacctttaattctattttgtatttcattcttggtattg--taaatgtaaa-ct |
30946528 |
T |
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| Q |
208 |
gagcaaattttggtgatttcatgacataggcagtaaactcctaaatgggtgacgtgattgaccttgaattgatgtcc |
284 |
Q |
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| T |
30946527 |
gagcaaattttggttttgtcatgacataggcactaaactcctaactggttgacatgattgaccttaaattgttgtcc |
30946451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 30931893 - 30931760
Alignment:
| Q |
143 |
gtatatacttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaattttggtgatt-tcatgacataggcagt |
241 |
Q |
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| T |
30931893 |
gtatatacatgtaaccttgcagcttattttgtatttcattctatgtattg--taaatgtaaagcaaagcaaattttggcgattgtccagacataggcagc |
30931796 |
T |
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| Q |
242 |
aaactcctaaatgggtgacgtgattgaccttgaatt |
277 |
Q |
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| T |
30931795 |
aaactcctaactgcatgacatgatttaccttgaatt |
30931760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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