View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_21 (Length: 287)
Name: NF9682_low_21
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 24358479 - 24358739
Alignment:
| Q |
11 |
tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaa |
110 |
Q |
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| T |
24358479 |
tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaa |
24358578 |
T |
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| Q |
111 |
gaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagtgtgcatatatat |
209 |
Q |
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| T |
24358579 |
gaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttcagtgt--acatatat |
24358676 |
T |
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| Q |
210 |
aatacataatggattgatgctcttcaagagtttcttcgatgttttacatttcacacatatatg |
272 |
Q |
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| T |
24358677 |
aatacataatggattgatgctcttcaagagtttcttctttgatttacattgcacgcatatatg |
24358739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 24369844 - 24370020
Alignment:
| Q |
20 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaa |
119 |
Q |
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| T |
24369844 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctag |
24369943 |
T |
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| Q |
120 |
acaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttca |
195 |
Q |
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| T |
24369944 |
acaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttca |
24370020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 24364806 - 24364625
Alignment:
| Q |
17 |
attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc |
116 |
Q |
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| T |
24364806 |
attcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggc |
24364707 |
T |
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| Q |
117 |
taaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagt |
197 |
Q |
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| T |
24364706 |
tagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttcagt |
24364625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 24354862 - 24354974
Alignment:
| Q |
53 |
ttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccaca |
152 |
Q |
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| T |
24354862 |
ttgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctca |
24354958 |
T |
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| Q |
153 |
taagaaagttcgaggt |
168 |
Q |
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| T |
24354959 |
taagaaagttagaggt |
24354974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 24344557 - 24344634
Alignment:
| Q |
20 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggc |
100 |
Q |
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| T |
24344557 |
cttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttagatgaatggc |
24344634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 24370017 - 24370057
Alignment:
| Q |
232 |
ttcaagagtttcttcgatgttttacatttcacacatatatg |
272 |
Q |
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| T |
24370017 |
ttcaagagtttcttcgatgttttacatttcacacatatatg |
24370057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 24351741 - 24351880
Alignment:
| Q |
17 |
attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc |
116 |
Q |
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| T |
24351741 |
attcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgc |
24351837 |
T |
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| Q |
117 |
taaacaaagatcaccttttgtttctcctcgaccacataagaaa |
159 |
Q |
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|| | |||| |||| || ||| ||||||||||||||||||| |
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| T |
24351838 |
tagaaaaaggccaccattattttatcctcgaccacataagaaa |
24351880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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