View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_22 (Length: 270)
Name: NF9682_low_22
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 30956452 - 30956708
Alignment:
| Q |
13 |
atactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcgg |
112 |
Q |
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| T |
30956452 |
atactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcgg |
30956551 |
T |
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| Q |
113 |
ctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttaccatttattttattccatgattttctttga |
212 |
Q |
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| T |
30956552 |
ctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttactatttattttattccatgattttctttga |
30956651 |
T |
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| Q |
213 |
agtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatc |
269 |
Q |
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| T |
30956652 |
agtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatc |
30956708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 269
Target Start/End: Original strand, 30946272 - 30946472
Alignment:
| Q |
69 |
ttagagccaaccactaaaagaagcgccttgagggaattctgcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaac |
168 |
Q |
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||||||||||| || || ||||||| ||||| |||| |||||||||| || ||||| || |||||||| | ||||||| ||| | | |||||||||| |
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| T |
30946272 |
ttagagccaacagctggaataagcgccaagagggcattccgcggctgtttatattttgcggtatttgactttggtcatggcattcgcggcggttccaaac |
30946371 |
T |
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| Q |
169 |
tgccgtaattgttaccatttattttattccatgattttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaat |
268 |
Q |
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| T |
30946372 |
tgccataattgttgccatttattttattgaaataatttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaatttaaggtcaat |
30946471 |
T |
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| Q |
269 |
c |
269 |
Q |
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| T |
30946472 |
c |
30946472 |
T |
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