View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_7 (Length: 458)
Name: NF9682_low_7
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 24620980 - 24620536
Alignment:
| Q |
1 |
atgattaagcgtatatttgagcaataccaaacttaacctaaagcttactcgcttagtaccttaggacgcagggctggaacaaggctaagggaccaaagct |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24620980 |
atgattaagcgtatatttgagcaataccaagcttaacctaaagcttactcgcttagtaccttaggacgcagggctggaacaaggctaagggaccaaaact |
24620881 |
T |
|
| Q |
101 |
gatgcaccaaaacataaccccaaattctgcagcatcttagcagctcttgcaacaatagacactgaccaggcaagttgataagactcttgatgaccttgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
24620880 |
gatgcaccaaaacataaccccaaattctgcagcatcttagcagctcttgcaacaatagacactaaccaggctagttgataagactcttgatgaccttgat |
24620781 |
T |
|
| Q |
201 |
aagacacataaccccaaattctggtcaataagactcttgatgaccttcaaaccatctcaattgaaactcaagaagcagctatgagaaaatggcttaagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24620780 |
aagacacataaccccaaattctggtcaataagactcttgatgaccttcaaaccatctcaattgaaactcaagaagcagctatgagaaaatggtttaagga |
24620681 |
T |
|
| Q |
301 |
agttgttaagagtatggaagctgttgagctcaagaaatccttcaagcaaccgtcagacactcctcactatcatgatcctaccaaagagattcctcagatt |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620680 |
agttgttaagagtatggaagttgttgagctcaagaaatccttcaagcaactgtcagacactcctcactatcatgatcctaccaaagagattcctcagatt |
24620581 |
T |
|
| Q |
401 |
gtcaagactgggcttgatacctcctggataaccaacatgttcatc |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620580 |
gtcaagactgggcttgatacctcctggataaccaacatgttcatc |
24620536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 24613476 - 24613306
Alignment:
| Q |
1 |
atgattaagcgtatatttgagcaataccaaacttaacctaaagcttactcgcttagtaccttaggacgcagggctggaacaaggctaagggaccaaagct |
100 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
24613476 |
atgatttagcgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtaccttaggacacagggctggaacgaggctaa-ggaccaaagct |
24613378 |
T |
|
| Q |
101 |
gatgcaccaaaacataac-cccaaattctgcagcatcttagcagctcttgcaacaatagacactgaccaggc |
171 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
24613377 |
gatgcaccaaaacataacacccaaattctgcagcatcttagcagctcttgcagcaacagaaactgaccaggc |
24613306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 24653095 - 24652944
Alignment:
| Q |
1 |
atgattaagcgtatatttgagcaataccaaacttaacctaaagcttactcgcttagtaccttaggacgcagggctggaacaaggctaagggaccaaagct |
100 |
Q |
| |
|
|||||| | |||||||||||||| |||||| |||||||| ||||| |||||||||||| ||||||| ||| |||| |||| ||||||| ||||||||||| |
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| T |
24653095 |
atgattcaacgtatatttgagcattaccaagcttaacctgaagctcactcgcttagtatcttaggatgcatggctagaacgaggctaa-ggaccaaagct |
24652997 |
T |
|
| Q |
101 |
gatgcaccaaaacataaccccaaattctgcagcatcttagcagctcttgcaac |
153 |
Q |
| |
|
||||| ||||| ||||||||| |||||| || ||||||||||||||||||||| |
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|
| T |
24652996 |
gatgcgccaaatcataaccccgaattctacaacatcttagcagctcttgcaac |
24652944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 26055420 - 26055484
Alignment:
| Q |
299 |
gaagttgttaagagtatggaagctgttgagctcaagaaatccttcaagcaaccgtcagacactcc |
363 |
Q |
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||||||| |||||||||||||| ||| |||||||||| ||| ||||||||| ||||||| |||| |
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| T |
26055420 |
gaagttgctaagagtatggaagttgtggagctcaagagatcaatcaagcaactgtcagactctcc |
26055484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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