View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9682_low_9 (Length: 455)
Name: NF9682_low_9
Description: NF9682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9682_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 36 - 445
Target Start/End: Complemental strand, 6504038 - 6503635
Alignment:
| Q |
36 |
ggttgagaagcggtggatcgtatcccgatctccggcgaccggaggtggtggttgctgatggcggagattatcggtaccggttttatgatgatactcatat |
135 |
Q |
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| T |
6504038 |
ggttgagaagcagaggatcgtattcggatctccggcgatcggaggcggtagttgttgacg------atgaacggtaccggttttatgatgatactcatat |
6503945 |
T |
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| Q |
136 |
tcacttcccttatcggaactccagattggaaagtgaagatgaatttcatcgggaaaaggttgcttccggtgaagtttcccggcgaccggaggtgaaacca |
235 |
Q |
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| T |
6503944 |
tcacttcccttatcggaactctagattggaaagtgaagatgaatttcaccgggaaaaggttacttccggtgaagtttcccggcgaccggaggtgaaacca |
6503845 |
T |
|
| Q |
236 |
gtgccagattctcaaactgaagatgttggaagaaatgttgatcggatatatgaagtggaaacggttgagaaatcggtaatcaatgattctgttgtggaga |
335 |
Q |
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| T |
6503844 |
gtgccagattctcaaactgaagatgttggaagaaatgttgatccgatgtatgaagtggaaacggttgagaaatcggtaatcaatgattctgttgtggaga |
6503745 |
T |
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| Q |
336 |
attcacaaccgccgcctctgcaaccgatacctgcgttgaggaaaaagaaaatcaggagtgcatctatggaaaacgtggcagcggtgacttctgcggaatt |
435 |
Q |
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| T |
6503744 |
attcacaaccgccgcctctgcaaccgatacctgcgttgaggaagaagaaaaccaggagtgcatctatggaaaacgtggcagtagtgacttctgcggaatt |
6503645 |
T |
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| Q |
436 |
ttcctctctg |
445 |
Q |
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| T |
6503644 |
ttcctctctg |
6503635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 6504319 - 6504098
Alignment:
| Q |
16 |
aaatccatcggtgtttaataggttgagaagcggtggatcgtatcccgatctccggcgaccggaggtggtggttgctgatggcggagattatcggtaccgg |
115 |
Q |
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| T |
6504319 |
aaatccatcggtgtttaatcggttgagaagcggtggatcgtatccggatctccgtcgaccggaggtggtggttgctgacggcggcgatgatcggtaccgg |
6504220 |
T |
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| Q |
116 |
ttttatgatgatactcatattcacttcccttatcggaactccagattggaaagtgaagatgaatttcatcgggaaaaggttgcttccggtgaagtttccc |
215 |
Q |
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| T |
6504219 |
ttttatgatgatactcgtgtaaattttcgttatcggtatccgagatttcaagatgaagatgaatttcaccgggagacggttacttccggtgaaactttcc |
6504120 |
T |
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| Q |
216 |
ggcgaccggaggtgaaaccagt |
237 |
Q |
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||| |||||||||||||||||| |
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| T |
6504119 |
ggcaaccggaggtgaaaccagt |
6504098 |
T |
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