View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9683_low_10 (Length: 250)
Name: NF9683_low_10
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9683_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 40705776 - 40705613
Alignment:
| Q |
87 |
gtgtttcaatcttctcatcaacctccttcaacttcttatcagcacgctttccaagatccttcacttcttcagtagtcagtccatcaagaatattgttgtt |
186 |
Q |
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| T |
40705776 |
gtgtatcaatcttctcatcaacctccttcaacttcttctcagcacgctttccaagatccttcacttcttcagtagtcagtccatcaagaatattgttgtt |
40705677 |
T |
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| Q |
187 |
ctcttgcaatttcatgagcataaaaagatcccactcttgctcatgattctcatatttcaacttt |
250 |
Q |
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| T |
40705676 |
ggcttgcaatttcatgagcataaaaagatcccactcttgctcatgattctcatatttcaacttt |
40705613 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 40676933 - 40677004
Alignment:
| Q |
87 |
gtgtttcaatcttctcatcaacctccttcaacttcttatcagcacgctttccaagatccttcacttcttcag |
158 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||| |
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| T |
40676933 |
gtgtatcaatcttgccatcaacctccttcaacttcttatcaacacgcttagcaagatctttcagttcttcag |
40677004 |
T |
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