View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9683_low_13 (Length: 247)

Name: NF9683_low_13
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9683_low_13
NF9683_low_13
[»] chr7 (24 HSPs)
chr7 (171-224)||(4268806-4268859)
chr7 (171-224)||(4268885-4268938)
chr7 (171-224)||(28289368-28289421)
chr7 (171-224)||(48843708-48843761)
chr7 (171-215)||(25055942-25055986)
chr7 (173-224)||(19104948-19104999)
chr7 (178-224)||(40339612-40339658)
chr7 (171-224)||(19303339-19303392)
chr7 (171-224)||(24780263-24780316)
chr7 (174-215)||(25441024-25441065)
chr7 (171-224)||(30312688-30312741)
chr7 (171-224)||(34012610-34012663)
chr7 (172-224)||(6563364-6563416)
chr7 (184-224)||(29636184-29636224)
chr7 (171-207)||(40753375-40753411)
chr7 (172-215)||(45499769-45499812)
chr7 (174-215)||(2297195-2297236)
chr7 (174-215)||(6747378-6747419)
chr7 (174-215)||(12977644-12977685)
chr7 (174-215)||(12983102-12983143)
chr7 (174-215)||(18292487-18292528)
chr7 (171-204)||(37490960-37490993)
chr7 (181-218)||(42753875-42753912)
chr7 (171-224)||(10476289-10476346)
[»] chr4 (16 HSPs)
chr4 (171-224)||(19451155-19451208)
chr4 (172-224)||(47817892-47817944)
chr4 (171-224)||(30261412-30261465)
chr4 (171-224)||(41496358-41496411)
chr4 (171-224)||(6991213-6991266)
chr4 (172-224)||(47458338-47458390)
chr4 (171-224)||(620126-620179)
chr4 (171-224)||(11364379-11364432)
chr4 (171-224)||(34413497-34413550)
chr4 (171-224)||(50203227-50203280)
chr4 (172-224)||(44651041-44651093)
chr4 (171-207)||(44868203-44868239)
chr4 (174-224)||(7905960-7906010)
chr4 (172-224)||(10573105-10573158)
chr4 (174-215)||(25231327-25231368)
chr4 (171-224)||(44061147-44061200)
[»] chr6 (25 HSPs)
chr6 (172-224)||(13011295-13011347)
chr6 (172-224)||(13503791-13503843)
chr6 (171-224)||(21271349-21271402)
chr6 (172-223)||(32619772-32619823)
chr6 (171-224)||(17828436-17828489)
chr6 (171-224)||(20226167-20226220)
chr6 (171-224)||(22120151-22120204)
chr6 (172-224)||(3988692-3988743)
chr6 (171-215)||(31233568-31233612)
chr6 (171-224)||(12459265-12459318)
chr6 (183-224)||(12588678-12588719)
chr6 (171-220)||(17552193-17552242)
chr6 (171-224)||(32193963-32194015)
chr6 (172-224)||(1502700-1502752)
chr6 (173-224)||(3847805-3847856)
chr6 (178-224)||(577215-577261)
chr6 (177-223)||(8957922-8957968)
chr6 (177-223)||(8961389-8961435)
chr6 (178-224)||(9940801-9940847)
chr6 (171-217)||(18737034-18737080)
chr6 (174-215)||(4850455-4850496)
chr6 (174-215)||(29400097-29400138)
chr6 (174-215)||(32429439-32429480)
chr6 (172-224)||(13597901-13597953)
chr6 (171-211)||(16127956-16127996)
[»] chr3 (19 HSPs)
chr3 (172-224)||(50646086-50646138)
chr3 (171-224)||(42072138-42072191)
chr3 (171-224)||(8817294-8817347)
chr3 (171-224)||(22857209-22857262)
chr3 (175-224)||(30315463-30315512)
chr3 (171-224)||(36844686-36844739)
chr3 (171-224)||(38141103-38141156)
chr3 (172-224)||(7230839-7230891)
chr3 (171-215)||(47823362-47823406)
chr3 (172-224)||(48903439-48903491)
chr3 (171-224)||(30680767-30680820)
chr3 (172-213)||(48901871-48901912)
chr3 (171-215)||(44064409-44064453)
chr3 (173-224)||(40487981-40488032)
chr3 (178-224)||(19373739-19373785)
chr3 (171-209)||(40717316-40717354)
chr3 (172-224)||(9189379-9189432)
chr3 (171-204)||(31190649-31190682)
chr3 (176-224)||(30934758-30934806)
[»] chr8 (17 HSPs)
chr8 (161-224)||(2375783-2375846)
chr8 (171-221)||(515058-515108)
chr8 (171-224)||(6115951-6116004)
chr8 (171-224)||(15750276-15750329)
chr8 (171-224)||(34796628-34796681)
chr8 (171-224)||(40399824-40399877)
chr8 (171-215)||(5295353-5295397)
chr8 (171-224)||(13367897-13367948)
chr8 (172-224)||(15227723-15227775)
chr8 (171-224)||(9812326-9812379)
chr8 (171-224)||(42179248-42179301)
chr8 (184-224)||(13496391-13496431)
chr8 (173-224)||(41679465-41679514)
chr8 (171-222)||(33746086-33746137)
chr8 (174-215)||(396174-396215)
chr8 (174-215)||(15160406-15160447)
chr8 (171-224)||(29312139-29312192)
[»] chr5 (16 HSPs)
chr5 (172-221)||(11977744-11977793)
chr5 (171-224)||(21634264-21634317)
chr5 (171-224)||(21642511-21642564)
chr5 (172-224)||(13974427-13974479)
chr5 (171-224)||(1309305-1309358)
chr5 (171-224)||(34534512-34534565)
chr5 (171-224)||(4911056-4911109)
chr5 (172-224)||(14161848-14161900)
chr5 (171-224)||(38370025-38370078)
chr5 (173-224)||(27557769-27557820)
chr5 (172-215)||(28591572-28591615)
chr5 (178-224)||(843171-843217)
chr5 (142-215)||(32158694-32158774)
chr5 (172-224)||(7736527-7736580)
chr5 (174-215)||(10344892-10344933)
chr5 (174-215)||(25362760-25362801)
[»] chr1 (21 HSPs)
chr1 (171-224)||(8989584-8989637)
chr1 (171-224)||(26595014-26595067)
chr1 (171-224)||(25560817-25560870)
chr1 (171-224)||(29568049-29568102)
chr1 (172-224)||(8894961-8895013)
chr1 (185-224)||(7191165-7191204)
chr1 (173-224)||(16757145-16757196)
chr1 (172-218)||(52707001-52707047)
chr1 (171-224)||(28538358-28538411)
chr1 (171-224)||(44557014-44557067)
chr1 (172-224)||(18794488-18794540)
chr1 (178-224)||(31699241-31699287)
chr1 (171-224)||(38947747-38947799)
chr1 (171-224)||(39125746-39125799)
chr1 (171-224)||(51244780-51244833)
chr1 (171-209)||(5225774-5225812)
chr1 (174-215)||(26352039-26352080)
chr1 (174-215)||(34047191-34047232)
chr1 (174-215)||(50249462-50249503)
chr1 (174-215)||(52023931-52023972)
chr1 (171-223)||(46554925-46554977)
[»] chr2 (21 HSPs)
chr2 (172-224)||(8540192-8540244)
chr2 (172-224)||(37038717-37038769)
chr2 (173-224)||(33056044-33056095)
chr2 (171-225)||(43971928-43971982)
chr2 (171-224)||(4658178-4658231)
chr2 (171-224)||(19164507-19164560)
chr2 (172-224)||(4469599-4469650)
chr2 (171-224)||(10195828-10195881)
chr2 (175-224)||(11188200-11188249)
chr2 (174-215)||(32022860-32022901)
chr2 (183-215)||(7644722-7644754)
chr2 (171-215)||(7872725-7872769)
chr2 (171-211)||(11132715-11132755)
chr2 (173-224)||(27964175-27964224)
chr2 (172-220)||(44712181-44712229)
chr2 (171-214)||(9366122-9366164)
chr2 (172-207)||(9391540-9391575)
chr2 (171-213)||(15083115-15083157)
chr2 (172-222)||(27726351-27726400)
chr2 (171-224)||(29412137-29412190)
chr2 (174-214)||(14286083-14286123)
[»] scaffold0565 (1 HSPs)
scaffold0565 (171-224)||(9901-9954)
[»] scaffold0026 (1 HSPs)
scaffold0026 (171-224)||(4294-4347)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 4268859 - 4268806
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4268859 gtttttacacacatattaagaaatgcattaattaaaagaaagagagatgttatt 4268806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 4268938 - 4268885
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  4268938 gtttttacacacatattaagaaatgcattaattaaaagaaagaaagatgttatt 4268885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 28289421 - 28289368
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||    
T  28289421 gtttttacacacatattaataaatacattaattaaaataaagagagatgttatt 28289368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 48843761 - 48843708
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||| ||||||||||||||| | | ||||||||||||||||||||||||    
T  48843761 gtttttacatacatattaagaaatgcactgattaaaagaaagagagatgttatt 48843708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 25055986 - 25055942
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  25055986 gtttttacacatatattaaaaaatgtattaattaaaagaaagaga 25055942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 19104948 - 19104999
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||| |||| ||||||||||||||||||||||||| || |||||    
T  19104948 ttttacacacattttaataaatgtattaattaaaagaaagagatatcttatt 19104999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 40339658 - 40339612
Alignment:
Q  178 cacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  40339658 cacacagattaagaaatgcattaattaaaagaaagagaaatgttatt 40339612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 19303339 - 19303392
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||  |||||||| ||||| ||||||||||||||||||| ||||||||    
T  19303339 gtttttacatgcatattaaaaaatgcattaattaaaagaaagagaaatgttatt 19303392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 24780263 - 24780316
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||  |||| |||| ||||||||||||||||||||| ||||||||||||    
T  24780263 gtttttacgtacatgttaaaaaatgtattaattaaaagaaaaagagatgttatt 24780316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 25441065 - 25441024
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  25441065 tttacacacatattaagaaatgtaatgattaaaagaaagaga 25441024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 30312741 - 30312688
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||| | ||||||||    
T  30312741 gtttttacacatatattaaaaaatgcattaattaaaagaaagataaatgttatt 30312688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 34012663 - 34012610
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||||||||  ||||||||||||||||| | ||||||||    
T  34012663 gtttttacacatatattaagaaatccattaattaaaagaaagataaatgttatt 34012610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 6563364 - 6563416
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| || ||||||||||||  ||||||||||||||||||| ||||||||    
T  6563364 tttttacgcatatattaagaaatacattaattaaaagaaagagacatgttatt 6563416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 29636184 - 29636224
Alignment:
Q  184 tattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  29636184 tattaagaaatgcattaatcaaaagaaagagagatgttatt 29636224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 40753375 - 40753411
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaa 207  Q
    ||||||||||||||||||||||||| |||||||||||    
T  40753375 gtttttacacacatattaagaaatgcattaattaaaa 40753411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 45499769 - 45499812
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||||  ||||||||||| |||||||    
T  45499769 tttttacacacatattaagaaatacattaattaaaataaagaga 45499812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 2297236 - 2297195
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  2297236 tttacacacatattaagaaatgcaatgattaaaagaaagaga 2297195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 6747419 - 6747378
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  6747419 tttacacacatattaagaaatgcaatgattaaaagaaagaga 6747378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 12977644 - 12977685
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  12977644 tttacacacatattaagaaatgcaatgattaaaagaaagaga 12977685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 12983102 - 12983143
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  12983102 tttacacacatattaagaaatgcaatgattaaaagaaagaga 12983143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 18292528 - 18292487
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  18292528 tttacacacatattaagaaatgcaatgattaaaagaaagaga 18292487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 37490993 - 37490960
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaatta 204  Q
    ||||||||||||||||||||||||| ||||||||    
T  37490993 gtttttacacacatattaagaaatgaattaatta 37490960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 42753912 - 42753875
Alignment:
Q  181 acatattaagaaatgtattaattaaaagaaagagagat 218  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  42753912 acatattaagaaatgtattaattaaaataaaaagagat 42753875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 10476346 - 10476289
Alignment:
Q  171 gtttttacacacatattaagaaatg----tattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| |||||     ||||||||||||||||||| ||||||||    
T  10476346 gtttttacacacatattaataaatgcattaattaattaaaagaaagagaaatgttatt 10476289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 19451155 - 19451208
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19451155 gtttttacacacatattaagaaatgcattaattaaaagaaagagagatgttatt 19451208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 47817944 - 47817892
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  47817944 tttttatacacatattaagaaatgcattaattaaaagaaagagagatgttatt 47817892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 30261465 - 30261412
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  30261465 gtttttacacacatattaagaaatacattaatttaaagaaagagagatgttatt 30261412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 41496411 - 41496358
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  41496411 gtttttacacacatattaaaaaatgtattaattaaaagaaatagaaatgttatt 41496358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 6991213 - 6991266
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| || |||||    
T  6991213 gtttttatacacatattaagaaatgcattaattaaaagaaagagatattttatt 6991266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 47458338 - 47458390
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||| ||||  ||||||||||||||||| ||||||||||    
T  47458338 tttttacacacatattaaaaaatacattaattaaaagaaagacagatgttatt 47458390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 620126 - 620179
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||| |||| |||| |||||||||| |||||||||||||    
T  620126 gtttttacacatatattaaaaaatatatttattaaaagaaggagagatgttatt 620179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 11364432 - 11364379
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||||||||| ||||| |||||||||||||||| || ||||||||    
T  11364432 gtttttatacacatattaaaaaatgcattaattaaaagaaagggatatgttatt 11364379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 34413497 - 34413550
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||| |||||||||||  |||||||||||||||||| ||||||||    
T  34413497 gtttttatacacaaattaagaaatgcgttaattaaaagaaagagaaatgttatt 34413550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 50203280 - 50203227
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||| ||||||||||||||||| ||| |||||||||||| | ||||||||    
T  50203280 gtttttacgcacatattaagaaatgtgttagttaaaagaaagaaatatgttatt 50203227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 44651093 - 44651041
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| | ||||||||    
T  44651093 tttttatacacatatttagaaatgcattaattaaaagaaagatatatgttatt 44651041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 44868203 - 44868239
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaa 207  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44868203 gtttttacacacatattaagaaatatattaattaaaa 44868239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 7905960 - 7906010
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||| | | |||||||||||||||  |||||||    
T  7905960 tttacacacatattaagaaatgcaatgattaaaagaaagagaattgttatt 7906010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 10573105 - 10573158
Alignment:
Q  172 tttttacacacatattaagaaa-tgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||| ||| |  |||| |||||||||||||||||||||||    
T  10573105 tttttacacacatattaaaaaaatacattatttaaaagaaagagagatgttatt 10573158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 25231368 - 25231327
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  25231368 tttacacacatattaagaaatgcaatgattaaaagaaagaga 25231327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 44061200 - 44061147
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| |||| |||||||||||| ||||||||| ||||| | ||||||||||    
T  44061200 gtttttatacacgtattaagaaatgcattaattaagagaaaaatagatgttatt 44061147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 13011295 - 13011347
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13011295 tttttacacacatattaagaaatgcattaattaaaagaaagagagatgttatt 13011347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 13503791 - 13503843
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  13503791 tttttacacacatattaagaaatgcattaattaaaagaaagagaaatgttatt 13503843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 21271349 - 21271402
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  21271349 gtttttacacacatattaagaaatgcattatttaaaataaagagagatgttatt 21271402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 32619772 - 32619823
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttat 223  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  32619772 tttttacacacatattaagaaatacattaattaaaagaaagagaaatgttat 32619823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 17828489 - 17828436
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  17828489 gtttctacacacaaattaagaaatgcattaattaaaagaaagaaagatgttatt 17828436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 20226167 - 20226220
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  20226167 gtttttccacatatattaagaaatgcattaatttaaagaaagagagatgttatt 20226220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 22120151 - 22120204
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  22120151 gtttttccacatatattaagaaatgcattaatttaaagaaagagagatgttatt 22120204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 3988692 - 3988743
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||    
T  3988692 tttttacacacatattgagaaatgcat-aattaaaagaaagagagatgttatt 3988743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 31233568 - 31233612
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  31233568 gtttttacacacatattaagaaatacattaattaaaagaaagaga 31233612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 12459265 - 12459318
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||| ||||||||  ||||||||||||||||| |||| |||||    
T  12459265 gtttttacacacatactaagaaatacattaattaaaagaaagaaagatattatt 12459318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 12588719 - 12588678
Alignment:
Q  183 atattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  12588719 atattaagaaatgcattaattaaaagaaagagagattttatt 12588678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 17552193 - 17552242
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgt 220  Q
    ||||||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  17552193 gtttttacacacagattaaaaaatacattaattaaaagaaagagagatgt 17552242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 32194015 - 32193963
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||    
T  32194015 gtttttacacatatattaagaaatgtattaaataaaa-aaatagagatgttatt 32193963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 1502700 - 1502752
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||||    
T  1502700 tttttacatacataataagaaatgcattgattaaaagaaatagagatgttatt 1502752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 3847856 - 3847805
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||| |||||||||||||  |||||||||||||||||  |||||||||    
T  3847856 ttttacacgcatattaagaaataaattaattaaaagaaagaaggatgttatt 3847805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 577261 - 577215
Alignment:
Q  178 cacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| ||||||||||| ||||||||||| ||||||| ||||||||    
T  577261 cacacagattaagaaatgcattaattaaaataaagagaaatgttatt 577215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 8957968 - 8957922
Alignment:
Q  177 acacacatattaagaaatgtattaattaaaagaaagagagatgttat 223  Q
    ||||||||||||||||||  |||||||||| |||||||| |||||||    
T  8957968 acacacatattaagaaatacattaattaaatgaaagagatatgttat 8957922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 8961389 - 8961435
Alignment:
Q  177 acacacatattaagaaatgtattaattaaaagaaagagagatgttat 223  Q
    ||||||||||||||||||  |||||||||| |||||||| |||||||    
T  8961389 acacacatattaagaaatacattaattaaatgaaagagatatgttat 8961435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 9940847 - 9940801
Alignment:
Q  178 cacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| ||||||||||| || || ||||||||||||||||||||||    
T  9940847 cacacagattaagaaatgcatcaactaaaagaaagagagatgttatt 9940801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 18737034 - 18737080
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagaga 217  Q
    |||||||| |||||||||| ||||| ||||||||||||||| |||||    
T  18737034 gtttttacgcacatattaaaaaatgcattaattaaaagaaacagaga 18737080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 4850455 - 4850496
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  4850455 tttacacacatattaagaaatgcaatgattaaaagaaagaga 4850496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 29400138 - 29400097
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  29400138 tttacacacatattaagaaatgcaatgattaaaagaaagaga 29400097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 32429480 - 32429439
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  32429480 tttacacacatattaagaaatgcaatgattaaaagaaagaga 32429439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 13597901 - 13597953
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||||   | |||||||||||||  |||||||    
T  13597901 tttttacacacatattaagaaatgtaaggaataaaagaaagagaattgttatt 13597953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 16127956 - 16127996
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaa 211  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  16127956 gtttttacatatatattaagaaatgcattaattaaaagaaa 16127996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 50646086 - 50646138
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50646086 tttttacacacatattaaaaaatgtattaattaaaagaaagagagatgttatt 50646138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 42072191 - 42072138
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  42072191 gtttttacacacatattaagaaatatattaattaaaagaaagagatatgttatt 42072138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 8817347 - 8817294
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||    
T  8817347 gtttttacaaatatattaagaaatgtattaattaaaagaaagagagacgttatt 8817294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 22857262 - 22857209
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  22857262 gtttttacacacatattaaaaaatgcattaattaaaagaaagagcgatgttatt 22857209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 30315512 - 30315463
Alignment:
Q  175 ttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  30315512 ttacacacatattaagaaatgcattaattaagagaaagagagatgttatt 30315463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 36844686 - 36844739
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||    
T  36844686 gtttttagacacatattaagaaatgcattaattaacagaaagagagatattatt 36844739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 38141156 - 38141103
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||    
T  38141156 gtttttacatatatattaaaaaatgtattaattaaaagaaatagagatgttatt 38141103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 7230839 - 7230891
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||| ||||    
T  7230839 tttttacacacatattaagaaatgaattaataaaaataaagagagatgatatt 7230891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 47823362 - 47823406
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  47823362 gtttttatacacatattaaaaaatgtattaattaaaagaaagaga 47823406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 48903491 - 48903439
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| || |||||    
T  48903491 tttttacatacatattaagaaatgcattaattaaaagaaagagatatattatt 48903439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 30680767 - 30680820
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||  ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  30680767 gtttttacgtacatattaaaaaatgtattgattaaaagaaaaagagatgttatt 30680820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 48901912 - 48901871
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaaga 213  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  48901912 tttttacatacatattaagaaatgcattaattaaaagaaaga 48901871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 44064409 - 44064453
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    ||||||||||||||||||||||||| | | |||||||||||||||    
T  44064409 gtttttacacacatattaagaaatgcaatgattaaaagaaagaga 44064453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 40488032 - 40487981
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||||||||||||  ||||||||||||||||  ||||||||||    
T  40488032 ttttacatacatattaagaaatacattaattaaaagaaaggaagatgttatt 40487981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 19373785 - 19373739
Alignment:
Q  178 cacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| ||||||| ||| |||| |||||||||||||||||||||||    
T  19373785 cacacagattaagagatgcattagttaaaagaaagagagatgttatt 19373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 40717316 - 40717354
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaaga 209  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  40717316 gtttttacacacatattaagaaatgcattaatttaaaga 40717354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 9189379 - 9189432
Alignment:
Q  172 tttttacaca-catattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||| |||||||| ||||| ||||||||||| ||| ||||||||||||    
T  9189379 tttttacacaacatattaaaaaatgcattaattaaaataaaaagagatgttatt 9189432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 31190682 - 31190649
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaatta 204  Q
    ||||||||| ||||||||||||||||||||||||    
T  31190682 gtttttacatacatattaagaaatgtattaatta 31190649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 30934758 - 30934806
Alignment:
Q  176 tacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||| || ||||||  |||| |||||||||||||||||||||||    
T  30934758 tacacacatgttgagaaatacattagttaaaagaaagagagatgttatt 30934806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 2375783 - 2375846
Alignment:
Q  161 aatgaatgtcgtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  2375783 aatgaatttcgtttttacacatatattaataaatgcattaattaaaagaaagagagatgttatt 2375846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 515108 - 515058
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgtt 221  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  515108 gtttttatacacatattaagaaatgtattaattaaaataaagagagatgtt 515058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 6115951 - 6116004
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  6115951 gtttttacacacatattaaaaaatgcattaattaaaagaaagggagatgttatt 6116004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 15750276 - 15750329
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  15750276 gtttttacacacatattaagaaatacattaattaaaagaaagagagatattatt 15750329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 34796628 - 34796681
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||    
T  34796628 gtttttacacacatgttaagaaatgcattaattaaaagaaagagatatgttatt 34796681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 40399824 - 40399877
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  40399824 gtttttacacatatattaagaaatgcattaattaaaagaaagagatatgttatt 40399877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 5295353 - 5295397
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  5295353 gtttttacacacatattaagaaatgtattgattaaaagaaagaga 5295397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 13367897 - 13367948
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  13367897 gtttttacacacatattaagaaatgtattaattaaaa-aaaga-agatgttatt 13367948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 15227775 - 15227723
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||    
T  15227775 tttttacacgcatattaagaaatgcattaattaaaagaaaaaaagatgttatt 15227723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 9812379 - 9812326
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||||||||||||||| | ||||||||| ||||| ||||||||||    
T  9812379 gtttttatacacatattaagaaatgcactaattaaaataaagaaagatgttatt 9812326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 42179301 - 42179248
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| ||||  |||||||||||||||||| |||| ||||    
T  42179301 gtttttacacacatattaaaaaatacattaattaaaagaaagagtgatgatatt 42179248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 13496431 - 13496391
Alignment:
Q  184 tattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  13496431 tattaagaaatgcattaattaaaagaaagaaagatgttatt 13496391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 41679514 - 41679465
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||  |||||||| |||||||||||||||||||| |||||||    
T  41679514 ttttacacacata--aagaaatgcattaattaaaagaaagagaggtgttatt 41679465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 33746086 - 33746137
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgtta 222  Q
    |||||||||| |||||||| ||||| ||||||||||||||||| | ||||||    
T  33746086 gtttttacacgcatattaaaaaatgcattaattaaaagaaagaaatatgtta 33746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 396174 - 396215
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  396174 tttacacacatattaagaaatgcaatgattaaaagaaagaga 396215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 15160406 - 15160447
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  15160406 tttacacacatattaagaaatgcaatgattaaaagaaagaga 15160447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 29312139 - 29312192
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||| ||||||| ||||| ||||  ||||||||||||||| ||||||||||||    
T  29312139 gttttcacacacagattaaaaaatacattaattaaaagaaaaagagatgttatt 29312192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 11977793 - 11977744
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgtt 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11977793 tttttacacacatattaagaaatgcattaattaaaagaaagagagatgtt 11977744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 21634317 - 21634264
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21634317 gtttttacacacatattaagaaatgcattaattaaaataaagagagatgttatt 21634264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 21642564 - 21642511
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21642564 gtttttacacacatattaagaaatgcattaattaaaataaagagagatgttatt 21642511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 13974479 - 13974427
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  13974479 tttttacacacatattaagaaatgcattaattaaaagaaagagaggtgttatt 13974427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 1309305 - 1309358
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  1309305 gtttttacacacatattaagaaatgcattaattaaaagaaatagatatgttatt 1309358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 34534565 - 34534512
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||    
T  34534565 gtttttacacacatattaaaaaatgcattaattaaaagaaagagagatattatt 34534512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 4911056 - 4911109
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||  ||||||||||||||||| | ||||||||    
T  4911056 gtttttacacacatattaagaaatacattaattaaaagaaagataaatgttatt 4911109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 14161848 - 14161900
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||| |||||||||||||||||| |||||||||||||||||  |||||||||    
T  14161848 tttttgcacacatattaagaaatgcattaattaaaagaaagaaggatgttatt 14161900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 38370078 - 38370025
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||| ||||| ||||||||||| ||||||| ||||||||    
T  38370078 gtttttacacatatattaataaatgcattaattaaaataaagagatatgttatt 38370025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 27557769 - 27557820
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||| ||||||||||||||||  ||||||||||||||  ||||||||||||    
T  27557769 ttttatacacatattaagaaatacattaattaaaagaataagagatgttatt 27557820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 28591572 - 28591615
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||| ||||  |||||||||||||||||||    
T  28591572 tttttacacacatattaataaatacattaattaaaagaaagaga 28591615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 843217 - 843171
Alignment:
Q  178 cacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||| ||||||||||||| |||||||||||||| |||| ||||||||    
T  843217 cacaaatattaagaaatgcattaattaaaagaaggagatatgttatt 843171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 32158774 - 32158694
Alignment:
Q  142 aatactccatttgttttataatgaatgtcgtttt-------tacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||| ||||||||| ||||| |||||||||       |||||||||||||||||||| | | |||||||||||||||    
T  32158774 aatactccctttgttttaaaatgagtgtcgttttaggggtttacacacatattaagaaatgcaatgattaaaagaaagaga 32158694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 7736580 - 7736527
Alignment:
Q  172 tttttacacacatattaagaaa-tgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||| ||| || ||||||||||| ||||||| ||||||||    
T  7736580 tttttacacacatattaaaaaaatgcattaattaaaataaagagatatgttatt 7736527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 10344892 - 10344933
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  10344892 tttacacacatattaagaaatgcaatgattaaaagaaagaga 10344933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 25362760 - 25362801
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  25362760 tttacacacatattaagaaatgcaatgattaaaagaaagaga 25362801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 8989584 - 8989637
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  8989584 gtttttacacacatattaagaaatgcattaattaaaagaaagaaagatgttatt 8989637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 26595014 - 26595067
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  26595014 gtttttacacacatattaagaaatacattaattaaaagaaagagagatgttatt 26595067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 25560817 - 25560870
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  25560817 gtttttacacatatattaagaaatacattaattaaaagaaagagagatgttatt 25560870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 29568102 - 29568049
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  29568102 gtttttacacacatattaagaaatgcattaattaaaagaaagaaatatgttatt 29568049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 8894961 - 8895013
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  8894961 tttttatatacatattaagaaatgcattaattaaaagaaagagagatgttatt 8895013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 7191165 - 7191204
Alignment:
Q  185 attaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7191165 attaagaaatgtattaattaaaagaaagagagatgttatt 7191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 16757145 - 16757196
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  16757145 ttttacacacatattaagaaatacattaattaaaagaaagagaaatgttatt 16757196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 52707047 - 52707001
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagat 218  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  52707047 tttttacacacatattaagaaatatattaactaaaagaaagagagat 52707001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 28538411 - 28538358
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||| ||||| ||| || |||||||||||||||||||||||||||||||||||    
T  28538411 gttttcacacatatagtaggaaatgtattaattaaaagaaagagagatgttatt 28538358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 44557014 - 44557067
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  44557014 gtttttatacacatattaaaaaatgcattaattaaaagaaagagaaatgttatt 44557067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 18794488 - 18794540
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||| ||||| ||||||||||||||||| | ||||||||    
T  18794488 tttttacacacatattaataaatgcattaattaaaagaaagaaatatgttatt 18794540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 31699241 - 31699287
Alignment:
Q  178 cacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||    
T  31699241 cacacatattaagaaacacattaattaaaagaaagagagatgttatt 31699287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 38947799 - 38947747
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  38947799 gttttcacacacctattaagaaatgtat-aattaaaagaaagagagatattatt 38947747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 39125799 - 39125746
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||||||||| | | |||||||||||||||  |||||||    
T  39125799 gtttttacacacatattaagaaatgcaatgattaaaagaaagagaattgttatt 39125746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 51244780 - 51244833
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||| ||||  ||||||||||||||||||| ||||||||    
T  51244780 gtttttacacatatattaaaaaataaattaattaaaagaaagagatatgttatt 51244833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 5225774 - 5225812
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaaga 209  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  5225774 gtttttacgcacatattaagaaatatattaattaaaaga 5225812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 26352039 - 26352080
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  26352039 tttacacacatattaagaaatgcaattattaaaagaaagaga 26352080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 34047191 - 34047232
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  34047191 tttacacacatattaagaaatgcaatgattaaaagaaagaga 34047232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 50249503 - 50249462
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  50249503 tttacacacatattaagaaatgcaatgattaaaagaaagaga 50249462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 52023931 - 52023972
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  52023931 tttacacacatattaagaaatgcaatgattaaaagaaagaga 52023972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 46554977 - 46554925
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttat 223  Q
    |||||| |||||||||||  |  || |||||||||||||||||||||||||||    
T  46554977 gttttttcacacatattacaatttgcattaattaaaagaaagagagatgttat 46554925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 8540244 - 8540192
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  8540244 tttttacacacatattaagaaatgcattaattaaaagaaaaagagatgttatt 8540192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 37038717 - 37038769
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  37038717 tttttacacacatattaagaaatacattaattaaaagaaagagagatgttatt 37038769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 33056095 - 33056044
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  33056095 ttttacacacatattaaaaaatgtcttaattaaaagaaagagagatgttatt 33056044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 43971982 - 43971928
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttattg 225  Q
    ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  43971982 gtttttacacacatattaagaaatgcattaatcaaaagaaagagatatgttattg 43971928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 4658178 - 4658231
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  4658178 gtttttacacacatattaaaaaatgtattaattaaaataaagaaagatgttatt 4658231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 19164560 - 19164507
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  19164560 gtttttacacatatattaagaaatttattaattaaaagaaagagatatgttatt 19164507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 4469650 - 4469599
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4469650 tttttacacacatat-aagaaatgcattaattaaaagaaagagagatgttatt 4469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 10195881 - 10195828
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||| |  ||||||| |||||||||||||||||||||||||||||||||    
T  10195881 gtttttacatatttattaaggaatgtattaattaaaagaaagagagatgttatt 10195828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 11188200 - 11188249
Alignment:
Q  175 ttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  11188200 ttacacacatattaataaatgcattaatcaaaagaaagagagatgttatt 11188249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 32022860 - 32022901
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  32022860 tttacacacatattaagaaatgtaatgattaaaagaaagaga 32022901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 7644754 - 7644722
Alignment:
Q  183 atattaagaaatgtattaattaaaagaaagaga 215  Q
    |||||||||||||||||||||||||||||||||    
T  7644754 atattaagaaatgtattaattaaaagaaagaga 7644722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 7872725 - 7872769
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagaga 215  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||    
T  7872725 gtttttacacacatattaaaaaattcattaattaaaagaaagaga 7872769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 11132755 - 11132715
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaa 211  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  11132755 gtttttacgcacatattaagaaatgcattaattaaaagaaa 11132715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 27964175 - 27964224
Alignment:
Q  173 ttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||  |||||||| ||||||||||||||||| ||||||||||    
T  27964175 ttttacacacata--aagaaatgcattaattaaaagaaagaaagatgttatt 27964224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 44712181 - 44712229
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgt 220  Q
    |||||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  44712181 tttttacacacatattaaaaaatacattaattaaaagaaagaaagatgt 44712229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 9366122 - 9366164
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagag 214  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  9366122 gtttttacacacattttaa-aaatgtattaattaaaagaaagag 9366164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 9391540 - 9391575
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaa 207  Q
    |||||||||||||||||| |||||||||||||||||    
T  9391540 tttttacacacatattaaaaaatgtattaattaaaa 9391575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 15083115 - 15083157
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaaga 213  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||    
T  15083115 gtttttacacatatattaataaatgcattaattaaaagaaaga 15083157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 27726351 - 27726400
Alignment:
Q  172 tttttacacacatattaagaaatgtattaattaaaagaaagagagatgtta 222  Q
    |||||||||| |||||| |||||| |||||||||||| |||||||||||||    
T  27726351 tttttacacatatattatgaaatgcattaattaaaag-aagagagatgtta 27726400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 29412190 - 29412137
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||  ||||||||||||| |||||||||||| |||||| | ||||||    
T  29412190 gtttttacacgtatattaagaaatgcattaattaaaaggaagagataagttatt 29412137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 14286123 - 14286083
Alignment:
Q  174 tttacacacatattaagaaatgtattaattaaaagaaagag 214  Q
    |||||||||||||||||||||| | | ||||||||||||||    
T  14286123 tttacacacatattaagaaatgcaatgattaaaagaaagag 14286083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 9901 - 9954
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| | ||||||||||    
T  9901 gtttttacacatatattaaaaaatgcattaattaaaagaaaaaaagatgttatt 9954  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 4347 - 4294
Alignment:
Q  171 gtttttacacacatattaagaaatgtattaattaaaagaaagagagatgttatt 224  Q
    |||||||||||||||||||||||| ||||||  |||||||| | |||| |||||    
T  4347 gtttttacacacatattaagaaatatattaaagaaaagaaatatagatattatt 4294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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