View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9683_low_15 (Length: 237)
Name: NF9683_low_15
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9683_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 40705467 - 40705265
Alignment:
| Q |
1 |
aatcaaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgtagct |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40705467 |
aatcaaaaggactggaaattatagcacaagctggaacatcacaaagaatggtgagttcacttaccttctttaagagacccttctttcttttgttgtagct |
40705368 |
T |
|
| Q |
101 |
cgccttccttgccgagtcatcgggaattaaggccagcttcacctttcttcttgccattggttgcaacagaatttcaaagaaagttacgagaaatgagaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40705367 |
cgccttccttgccgagtcatcgggaattaaggccagcttcacctttcttcttgccattggttgcaacagaatttcaaagaaagttacgagaaatgagaag |
40705268 |
T |
|
| Q |
201 |
aag |
203 |
Q |
| |
|
||| |
|
|
| T |
40705267 |
aag |
40705265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 40677242 - 40677389
Alignment:
| Q |
4 |
caaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgtagctcgc |
103 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||||||| | | |||||| |||||||||||| |||||||||||||||||| ||| |||| || |
|
|
| T |
40677242 |
caaaaggactggaaattatagcacaagccggaatatcacaaagtgttgtcagttcagttaccttctttatgagacccttctttcttttattgaagcttgc |
40677341 |
T |
|
| Q |
104 |
cttccttgccgagtcatcgggaattaaggccagcttcacctttcttct |
151 |
Q |
| |
|
||||||||||| || ||| | || ||||| || |||||||| ||||| |
|
|
| T |
40677342 |
cttccttgccgcgttatcagagataaaggcaagtttcaccttccttct |
40677389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 40803043 - 40802934
Alignment:
| Q |
5 |
aaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgtagctcgcc |
104 |
Q |
| |
|
||||||| | ||||| ||||||||||| | ||| |||| ||| | | ||||||||| |||||||||| || ||||||||||| |||||||||| | ||| |
|
|
| T |
40803043 |
aaaaggatttgaaataatagcacaagcagaaactccacagagagttgagagttcactcaccttctttatgatacccttctttcgtttgttgtaggttgcc |
40802944 |
T |
|
| Q |
105 |
ttccttgccg |
114 |
Q |
| |
|
|||||||||| |
|
|
| T |
40802943 |
ttccttgccg |
40802934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34484720 - 34484816
Alignment:
| Q |
1 |
aatcaaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgta |
97 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | |||||||||| | |||||| || |||||||| | || ||||||||||||||| ||||| |
|
|
| T |
34484720 |
aatcaaaaggatcggaaattatagcacatgctggaataccacaaagaatagtgagttccctcaccttcttgatgatacccttctttctttttttgta |
34484816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34520417 - 34520514
Alignment:
| Q |
1 |
aatcaaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgtag |
98 |
Q |
| |
|
||||||| ||| | |||||||||||||| ||||||| |||||||||| | | ||| || || |||||||| | || |||||||||||| ||||||||| |
|
|
| T |
34520417 |
aatcaaacggattggaaattatagcacaggctggaatatcacaaagagtagtgagctctctcaccttcttaatgatacccttctttctcttgttgtag |
34520514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 37921061 - 37921181
Alignment:
| Q |
1 |
aatcaaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgtagct |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | || ||||||| |||||| || |||||||| | || |||||| |||||||| || ||| | |
|
|
| T |
37921061 |
aatcaaaaggattagaaattatagcacaagctggaatgccgcatagaatggtgagttcgctcaccttcttgatgatacccttttttcttttcttataggt |
37921160 |
T |
|
| Q |
101 |
cgccttccttgccgagtcatc |
121 |
Q |
| |
|
||||| ||||| || ||||| |
|
|
| T |
37921161 |
tgcctttcttgctgaatcatc |
37921181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34498819 - 34498888
Alignment:
| Q |
1 |
aatcaaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctt |
70 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | |||||||||||| |||||| || |||||||| |
|
|
| T |
34498819 |
aatcaaaaggatcggaaattatagcacatgctggaataccacaaagaatggtgagttctctcaccttctt |
34498888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 20856249 - 20856364
Alignment:
| Q |
5 |
aaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgtagctcgcc |
104 |
Q |
| |
|
||||||| | |||||||||||||| ||||||| | |||||||||||| |||||| || |||||||| | || |||||| |||||||| |||||| | ||| |
|
|
| T |
20856249 |
aaaaggattggaaattatagcacatgctggaataccacaaagaatggtgagttctctaaccttcttgatgatacccttttttcttttattgtaggttgcc |
20856348 |
T |
|
| Q |
105 |
ttccttgccgagtcat |
120 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
20856349 |
tttcttgccgaatcat |
20856364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 20849189 - 20849303
Alignment:
| Q |
5 |
aaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctttaagagacccttctttcttttgttgtagctcgcc |
104 |
Q |
| |
|
||||||| | |||||||||||||| ||||||| | |||||||||||| ||||| || || ||||| | || |||||| | |||||| |||||| | ||| |
|
|
| T |
20849189 |
aaaaggattggaaattatagcacatgctggaataccacaaagaatggtgagtt-tctaactttcttgatgatacccttttctcttttattgtaggttgcc |
20849287 |
T |
|
| Q |
105 |
ttccttgccgagtcat |
120 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
20849288 |
tttcttgccgaatcat |
20849303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3317308 - 3317377
Alignment:
| Q |
1 |
aatcaaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctt |
70 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | |||||||||| | |||||| || |||||||| |
|
|
| T |
3317308 |
aatcaaaaggatcggaaattatagcacatgctggaataccacaaagaatagtgagttctctcaccttctt |
3317377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9598703 - 9598772
Alignment:
| Q |
1 |
aatcaaaaggactcgaaattatagcacaagctggaacatcacaaagaatggcgagttcacttaccttctt |
70 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | |||||||||| | |||||| || |||||||| |
|
|
| T |
9598703 |
aatcaaaaggatcggaaattatagcacatgctggaataccacaaagaatagtgagttctctcaccttctt |
9598772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University