View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9683_low_17 (Length: 230)
Name: NF9683_low_17
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9683_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 40899871 - 40899649
Alignment:
| Q |
8 |
ttggttgccaacttactgattgtaagagcttatagtgttttcaccattcaatatttacatgaatatgattttattgagtttccaatgcagatatcaactg |
107 |
Q |
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| T |
40899871 |
ttggttgccaacttactgattgtaagagcttatagtgttttcaccattcaatatttacatgaatatgattttattgagtttccaatgtagatatcaactg |
40899772 |
T |
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| Q |
108 |
agcatattgatcacatcttcaagactcaataactttgcttttcaatggcattacagcctttgtctatcgtgatcttactggtatatttataagttcatgt |
207 |
Q |
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| T |
40899771 |
agcatattgatcacatcttcaagactcaataactttgcttttcaatggcattacagcctttgtctatcgtgatcttactggtatatttataagttcatgt |
40899672 |
T |
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| Q |
208 |
catttcatacattgcttcttatt |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
40899671 |
catttcatacattgcttcttatt |
40899649 |
T |
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