View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9683_low_19 (Length: 227)
Name: NF9683_low_19
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9683_low_19 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40899379 - 40899605
Alignment:
| Q |
1 |
gttagtagaatcaagtcttgaactcaacaatcttgctaaatttgtcgatgatgatttcatcgggtgcaacagttcagccgagtacttaatttctgattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40899379 |
gttagtagaatcaagtcttgaactcaacaatcttgctaaatttgtcgatgatgatttcatcgggtgcaacagttcagctgagtacttaatttctgattgg |
40899478 |
T |
|
| Q |
101 |
agttgggttacaatattttctgagctcaaattcgcttgtttctcgatatgtgttaccatgacataccaacatggtgtcaatgagataagagttatcagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40899479 |
agttgggttacaatattttctgagctcaaattcgcttgtttctcgatatgtgttaccatgacataccaacatggtgtcaatgagataagagttatcagtg |
40899578 |
T |
|
| Q |
201 |
caccatatgcctacaacaaatgtttgt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40899579 |
caccatatgcctacaacaaatgtttgt |
40899605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 39033933 - 39034111
Alignment:
| Q |
2 |
ttagtagaatcaagtcttgaactcaacaatcttgctaaatttgtcgatgatgatttcatcgggtgcaacagttcagccgagtacttaatttctgattgga |
101 |
Q |
| |
|
|||||||||| ||| |||| ||||| ||| | | ||||||||| |||||||||||||| || ||||| |||||||| ||||||| |||||||||||| | |
|
|
| T |
39033933 |
ttagtagaattaagggttgagctcaataatgtagataaatttgttgatgatgatttcattggatgcaatagttcagctgagtactcaatttctgattgca |
39034032 |
T |
|
| Q |
102 |
gttgggttacaatattttctgagctcaaattcgcttgtttctcgatatgtgttaccatgacataccaacatggtgtcaa |
180 |
Q |
| |
|
||| | ||||||||| ||||| ||||||| | |||||| |||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
39034033 |
attgtgacacaatatttgctgagtgcaaattcacacttttctcaatatgtgtgaccatgagataccagcatggtgtcaa |
39034111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University