View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9683_low_2 (Length: 412)
Name: NF9683_low_2
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9683_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 39285870 - 39286249
Alignment:
| Q |
18 |
attcatggggtacaaattggggtgaagatggttacttcaagttggaacgtaatgtgaaaaagagcaatacaggaaagtgtggaattgcaatgcaagcctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39285870 |
attcatggggtacaaattggggtgaagatggttacttcaagttggaacgtaatgtgaaaaagatcaatacaggaaagtgtggaattgcaatgcaagcctc |
39285969 |
T |
|
| Q |
118 |
atacccagtgaagtatggtcaaaattcagcttatgaaaacaatgaagtgcttgttagcagtgcttgaaacaccaccaacagtatctcaagtgttaaatat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39285970 |
atacccagtgaagtatggtcaaaattcagcttatgaaaacaatgaagagcttgttagcagtgcttgaaacaccaccaacagtatctcaagtgttaaatat |
39286069 |
T |
|
| Q |
218 |
tcctattgaattatatatgcttattggtttaatattgtaaatagagtattactattttctttacgtgaaagctgcacctaccagctttcactactgttat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39286070 |
tcctattgaattatatatgcttattggtttaatattgtaaatagagtattactattttctttacgtgaaagctgcacctaccagctttcactactgttat |
39286169 |
T |
|
| Q |
318 |
ttgatttcaatgtttaatttgaattgatttcaacttgctagttatattgtggatttatatagatttttgccaacaccctg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39286170 |
ttgatttcaatgtttaatttgaattgatttcaacttgctagttatattgtggatttatatagatttttgccaacaccctg |
39286249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University