View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9683_low_4 (Length: 346)
Name: NF9683_low_4
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9683_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 52565148 - 52565469
Alignment:
| Q |
7 |
cttcaaccgcagaaaaccatgaaaactacaagactaaacacaagctgacaattcgttggaagaaagaacagattagtgatgaaatgaataacaatcaaga |
106 |
Q |
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| T |
52565148 |
cttcaactgcagaaaaccatgaaaactacaagactaaacacaagctgacaattcgttggaagaaagaacaaattagtgatgaaatgaataacaatcaaga |
52565247 |
T |
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| Q |
107 |
agctgatcaggatggtacttcggtgaagtggatgtcttcaaagatgagaataatgaagaagatgatgatttctgatcaaacgggcagttctaacttaaca |
206 |
Q |
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| T |
52565248 |
agctgatcaggatggtacttcggtgaagtggatgtcttcaaagatgagaataatgaagaagatgatggtttctgatcaaacgggcagttctaacttaaca |
52565347 |
T |
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| Q |
207 |
agcaactctaagcagattaagtttgaagatcaaaagcaaccactgtcaccacaaggaacagataatagcagcagcaataattattcaactattagggttt |
306 |
Q |
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| T |
52565348 |
agcaactctaaacagattaagtttgaagatcaaaagcaaccactgtcaccacaaggaacagataatagcagcagcaataattattcaactattagggttt |
52565447 |
T |
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| Q |
307 |
gctctgattgcaacaccactaa |
328 |
Q |
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| T |
52565448 |
gctctgattgcaacaccactaa |
52565469 |
T |
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