View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9683_low_9 (Length: 252)
Name: NF9683_low_9
Description: NF9683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9683_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 1161220 - 1161397
Alignment:
| Q |
64 |
gcttttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaagatgcatgtaa |
163 |
Q |
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| T |
1161220 |
gcttttgtctattttttgagcgtacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaagatgcatgtaa |
1161319 |
T |
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| Q |
164 |
gctgaatgatgcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaataatgatgtccatc |
241 |
Q |
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| T |
1161320 |
gctgaatgatgcatcttgtatacttagatactcatcttatatatgcccggttgagttgaatgaataatgttgtacatc |
1161397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 880107 - 880022
Alignment:
| Q |
67 |
tttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaa |
152 |
Q |
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| T |
880107 |
tttgtctattttgtgagccttcatgacaaatatatttgcagagaatcattgctaacccaattcaaagaggttttttgcttcttgaa |
880022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 879994 - 879941
Alignment:
| Q |
153 |
gatgcatgtaagctgaatgatgcatcttgtatacttagatactcatcttatata |
206 |
Q |
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| T |
879994 |
gatgcatgtcagcagaatgatgcatcttgtatacttaggtactcatcttatata |
879941 |
T |
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