View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9684_high_3 (Length: 445)
Name: NF9684_high_3
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9684_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 42125909 - 42126319
Alignment:
| Q |
17 |
caaaggcaacaagataaatcccaagaaaatggtatatagcatcagactcggttttggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42125909 |
caaaggcaacaagataaatcccaagaaaatggtatatagcatcagactcggttttggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaa |
42126008 |
T |
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| Q |
117 |
taaataaatatcaatttctgttataaatttaatatatcgtgactcgtggagaattattaattatagacatgatttttgactcaaaattttgatgtcgact |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126009 |
taaataaatatcaatttctgttataaatttaatagatcgtgactcgtggacaattattaattatagacatgatttttgactcaaaattttgatgtcgact |
42126108 |
T |
|
| Q |
217 |
ttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaactt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42126109 |
ttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaacacagtgtcacatgcgatgtttgtaattt |
42126208 |
T |
|
| Q |
317 |
catgttcaaataacacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagtttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126209 |
catgttcaaataacacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccggaaaacaaatttaaaagtttt |
42126308 |
T |
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| Q |
417 |
gcatggtattg |
427 |
Q |
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| T |
42126309 |
gcatggtattg |
42126319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
216 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
288 |
Q |
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| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
215 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
291 |
Q |
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| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
221 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
287 |
Q |
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| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 20809087 - 20809151
Alignment:
| Q |
225 |
tgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaaca |
289 |
Q |
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||||||||||| |||||| |||| |||||| | |||| ||||||| ||||||||| |||| |||| |
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| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
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