View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9684_high_8 (Length: 325)

Name: NF9684_high_8
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9684_high_8
NF9684_high_8
[»] chr1 (1 HSPs)
chr1 (8-325)||(40733668-40733986)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 40733668 - 40733986
Alignment:
Q  8 ttggtgttgagaaggagacaatgcggttcgagttgacaagtgctcaaaccatgattaacattctccagtcccgtgttgaaaatctcagcaaagagaacga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40733668 ttggtgttgagaaggagacaatgcggttcgagttgacaagtgctcaaaccatgattaacattctccagtcccgtgttgaaaatctcagcaaagagaacga 40733767  T
Q  108 ggagatgaagatgatgatgagaaatccttaggaattgggagtgatctcattccttgtatgatgatgtaccagttatgtttacagttaattttggatatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40733768 ggagatgaagatgatgatgagaaatccttaggaattgggagtgatctcattccttgtatgatgatgtaccagttatgtttacagttaattttggatatct 40733867  T
Q  208 a-nnnnnnnnnncttgagtaagaattctagttcgtttctttgattgaacatgtgaatgacatgcatcattttgaaacatgtttttgtatgttatgtcttt 306  Q
    |           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40733868 atttttttttttcttgagtaagaattctagttcgtttctttgactgaacatgtgaatgacatgcatcattttgaaacatgtttttgtatgttatgtcttt 40733967  T
Q  307 cagtttcccattgttaaaa 325  Q
    |||||||||||||||||||    
T  40733968 cagtttcccattgttaaaa 40733986  T

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